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The Polymerase Chain Reaction

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 878))

Abstract

The polymerase chain reaction (PCR) has had a significant impact on all aspects of the molecular biosciences, from cancer research to forensic science. The sensitivity and specificity inherent in the technique allow minute quantities of genetic material to be detected while the unique properties of thermostable DNA polymerase ensure that abundant copies are reliably reproduced to levels that can be visualized and/or used for further applications. This chapter describes applications of PCR and PCR-RT to investigate primary cancer and metastatic disease at both the DNA and mRNA expression levels.

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References

  1. Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnhein N (1985) Enzymatic amplification of b-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anaemia. Science 230:1350–1354

    Article  PubMed  CAS  Google Scholar 

  2. Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491

    Article  PubMed  CAS  Google Scholar 

  3. Fehm T, Hoffmann O, Aktas B, Becker S, Solomayer EF, Wallwiener D, Kimmig R, Kasimir-Bauer S (2009) Detection and characterization of circulating tumor cells in blood of primary breast cancer patients by RT-PCR and comparison to status of bone marrow disseminated cells. Breast Cancer Res 11:4(R59)

    Google Scholar 

  4. Liang P, Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967–971

    Article  PubMed  CAS  Google Scholar 

  5. Cheng S, Fockler C, Barnes WM, Higuchi R (1994) Effective amplification of long targets from cloned inserts and human genomic DNA. Proc Natl Acad Sci USA 91:5695–5699

    Article  PubMed  CAS  Google Scholar 

  6. Kubista M, Andrade JM, Bengtsson M, Forootan A, Jonak J, Lind K, Sindelka R, Sjoback R, Sjogreen B, Strombom L, Stahlberg A, Zoric N (2006) The real-time polymerase chain reaction. Mol Aspect Med 27:95–125

    Article  CAS  Google Scholar 

  7. Bustin SA, Nolan T (2004) Pitfalls of the quantitative real-time reverse-transcriptase polymerase chain reaction. J Biomol Tech 15:155–166

    PubMed  Google Scholar 

  8. Kulis M, Esteller M (2010) DNA methylation in cancer. Adv Genet 70:27–56

    Article  PubMed  Google Scholar 

  9. Ferguson AT, Evron E, Umbricht CB, Pandita TK, Chan TA, Hermekin H, Marks JR, Lambers AR, Futreal PA, Stampfer MR, Sukumar S (2000) High frequency of methylation at the 14-3-3σ locus leads to gene silencing in breast cancer. Proc Natl Acad Sci USA 97:6049–6054

    Article  PubMed  CAS  Google Scholar 

  10. Herman JG, Graff JR, Myohanen S, Nelkin BD, Baylin SB (1996) Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands (DNA methylation/tumor suppressor genes/pl6/p15). Proc Natl Acad Sci USA 93:9821–9826

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Hazel M. Welch .

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Appendix

Appendix

Useful Web sites:

http://www.ncbi.nlm.nih.gov.

http://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi?LINK_LOC=BlastHome.

www.promega.com.

www.qiagen.com.

www.sigma.com.

www.invitrogen.com.

http://www.ensembl.org/index.html.

http://sigma-genosys.com.

www.sigmaaldrich.com/life-science/custom-oligos.html.

https://www.roche-applied-science.com.

http://www.proteinatlas.org/index.php.

http://www.ncri-onix.org.uk/portal/#S1.

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Welch, H.M. (2012). The Polymerase Chain Reaction. In: Dwek, M., Brooks, S., Schumacher, U. (eds) Metastasis Research Protocols. Methods in Molecular Biology, vol 878. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-854-2_5

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  • DOI: https://doi.org/10.1007/978-1-61779-854-2_5

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-61779-853-5

  • Online ISBN: 978-1-61779-854-2

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