Abstract
The killer-cell immunoglobulin-like receptors (KIR), which enable NK cells to detect allogeneic target cells and abnormalities in the expression of self-HLA molecules, are encoded by genes that display extensive copy number variation. These variations in the KIR genotype are relevant for multiple aspects of human health, including therapy of cancer. PCR with sequence-specific primers (SSP) is simplest and most widely used among techniques for studying KIR genotypes. Here, we present a protocol that details the critical steps of a method for KIR genotyping by PCR-SSP.
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References
Wagtmann N et al (1995) Molecular clones of the p58 NK cell receptor reveal immunoglobulin-related molecules with diversity in both the extra- and intracellular domains. Immunity 2:439–449
Vilches C, Parham P (2002) KIR: diverse, rapidly evolving receptors of innate and adaptive immunity. Annu Rev Immunol 20:217–251
Gómez-Lozano N et al (2005) The silent KIR3DP1 gene (CD158c) is transcribed and might encode a secreted receptor in a minority of humans, in whom the KIR3DP1, KIR2DL4 and KIR3DL1/KIR3DS1 genes are duplicated. Eur J Immunol 35:16–24
Ordonez D et al (2008) Duplication, mutation and recombination of the human orphan gene KIR2DS3 contribute to the diversity of KIR haplotypes. Genes Immun 9:431–437
Velardi A et al (2009) Natural killer cell allorecognition of missing self in allogeneic hematopoietic transplantation: a tool for immunotherapy of leukemia. Curr Opin Immunol 21:525–530
Cooley S et al (2010) Donor selection for natural killer cell receptor genes leads to superior survival after unrelated transplantation for acute myelogenous leukemia. Blood 116:2411–2419
Uhrberg M et al (1997) Human diversity in killer cell inhibitory receptor genes. Immunity 7:753–763
Vilches C et al (2007) Facilitation of KIR genotyping by a PCR-SSP method that amplifies short DNA fragments. Tissue Antigens 70:415–422
Gómez-Lozano N, Vilches C (2002) Genotyping of human killer-cell immunoglobulin-like receptor genes by polymerase chain reaction with sequence-specific primers: an update. Tissue Antigens 59:184–193
Chainonthee W et al (2010) Improved KIR gene and HLA-C KIR ligand sequence-specific primer polymerase chain reaction genotyping using whole genome amplification. Tissue Antigens 76:135–143
Sun JY et al (2004) Development of a multiplex PCR-SSP method for Killer-cell immunoglobulin-like receptor genotyping. Tissue Antigens 64:462–468
Ashouri E et al (2009) A novel duplex SSP-PCR typing method for KIR gene profiling. Tissue Antigens 74:62–67
Kulkarni S, Martin MP, Carrington M (2010) KIR genotyping by multiplex PCR-SSP. Methods 612:365–375
Alves LG, Rajalingam R, Canavez F (2009) A novel real-time PCR method for KIR genotyping. Tissue Antigens 73:188–191
Thompson A et al (2006) An improved RT-PCR method for the detection of killer-cell immunoglobulin-like receptor (KIR) transcripts. Immunogenetics 58:865–872
Crum KA et al (2000) Development of a PCR-SSOP approach capable of defining the natural killer cell inhibitory receptor (KIR) gene sequence repertoires. Tissue Antigens 56:313–326
Halfpenny IA et al (2004) Investigation of killer cell immunoglobulin-like receptor gene diversity: IV. KIR3DL1/S1. Hum Immunol 65:602–612
Nong T et al (2007) KIR genotyping by reverse sequence-specific oligonucleotide methodology. Tissue Antigens 69(suppl 1):92–95
Gonzalez A et al (2009) Killer cell immunoglobulin-like receptor allele discrimination by high-resolution melting. Hum Immunol 70:858–863
Witt CS, Martin A, Christiansen FT (2000) Detection of KIR2DL4 alleles by sequencing and SSCP reveals a common allele with a shortened cytoplasmic tail. Tissue Antigens 56:248–257
Houtchens KA et al (2007) High-throughput killer cell immunoglobulin-like receptor genotyping by MALDI-TOF mass spectrometry with discovery of novel alleles. Immunogenetics 59:525–537
Acknowledgements
This work was supported by grant SAF2010-22153-C03-03 from the Spanish Ministerio de Ciencia e Innovación. DO was supported by a grant from “Fundación LAIR”. NGL is supported by a grant from Instituto de Salud Carlos III (CP09/182). The authors have no conflicts of interest.
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Ordóñez, D., Moraru, M., Gómez-Lozano, N., Cisneros, E., Vilches, C. (2012). KIR Typing by Non-Sequencing Methods: Polymerase-Chain Reaction with Sequence-Specific Primers. In: Christiansen, F., Tait, B. (eds) Immunogenetics. Methods in Molecular Biology, vol 882. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-842-9_24
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DOI: https://doi.org/10.1007/978-1-61779-842-9_24
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Publisher Name: Humana Press, Totowa, NJ
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Online ISBN: 978-1-61779-842-9
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