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Novel NMR and MS Approaches to Metabolomics

  • Ian A. Lewis
  • Michael R. Shortreed
  • Adrian D. Hegeman
  • John L. MarkleyEmail author
Protocol
Part of the Methods in Pharmacology and Toxicology book series (MIPT)

Abstract

Identifying and quantifying metabolites in complex biological samples is one of the most challenging aspects of metabolomics. Recently, several important advances in databases, software, instrumentation, and laboratory techniques have greatly simplified the most laborious tasks of metabolite identification and have made quantification more reliable. These technological advances have made bioanalytically oriented studies a feasible alternative to the statistics-based methods commonly used for metabolomics. We discuss the tools that have become most important in our own research and comment on emerging technologies that may play an important role in future studies. In addition, we provide practical guidelines for designing studies and give the step-by-step protocols used in our lab for sample preparation, metabolite identification, and accurate quantification of molecules.

Key words

Bioanalytical metabolomics BMRB (BioMagResBank) extraction methodology identification informatics resources mass spectrometery MMCD (Madison Metabolomics Consortium Database) NMR spectroscopy quantification rNMR software 

Notes

Acknowledgments

This work was supported by the National Center for Research Resources of the National Institutes of Health under grant P41 RR02301; I.A.L. was the recipient of a fellowship from the NHGRI 1T32HG002760.

Glossary

1D

One-dimensional

2D

Two-dimensional

Bioanalytical metabolomics

Comprehensive quantitative analysis of metabolites in complex biological samples

HSQC

Heteronuclear single quantum correlation

MS

Mass spectrometry

NMR

Nuclear magnetic resonance

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Copyright information

© Springer Science+Business Media New York 2012

Authors and Affiliations

  • Ian A. Lewis
    • 1
  • Michael R. Shortreed
    • 2
  • Adrian D. Hegeman
    • 3
  • John L. Markley
    • 1
    Email author
  1. 1.Department of BiochemistryUniversity of Wisconsin-MadisonMadisonUSA
  2. 2.Department of ChemistryUniversity of Wisconsin-MadisonMadisonUSA
  3. 3.Department of Horticultural ScienceUniversity of MinnesotaSt. PaulUSA

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