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Assembly of Standardized DNA Parts Using BioBrick Ends in E. coli

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Gene Synthesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 852))

Abstract

Synthetic biologists have adopted the engineering principle of standardization of parts and assembly in the construction of a variety of genetic circuits that program living cells to perform useful tasks. In this chapter, we describe the BioBrick standard as a widely used method. We present methods by which new BioBrick parts can be designed and produced, starting with existing clones, naturally occurring DNA, or de novo. We detail the procedures by which BioBrick parts can be assembled into construction intermediates and into biological devices. These protocols are based on our experience in conducting synthetic biology research with undergraduate students in the context of the iGEM competition.

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References

  1. Knight T, et al. (2003) Idempotent Vector Design for the Standard Assembly of BioBricks. http://people.csail.mit.edu/tk/sa3.pdf. (Accessed 13 March 2010).

  2. Cai, Yizhi et al. (2007). A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts. Bioinformatics. Vol. 23(20): 2760–2767.

    Article  CAS  Google Scholar 

  3. Registry of Standard Biological Parts. http://partsregistry.org. (Accessed 11 April, 2010).

  4. Haynes, Karmella A., et al. (2008). Engineering bacteria to solve the Burnt Pancake Problem. Journal of Biological Engineering. Vol. 2(8): 1–12.

    Google Scholar 

  5. Baumgardner, Jordan, et al. (2009). Solving a Hamiltonian Path Problem with a Bacterial Computer. Journal of Biological Engineering. Vol. 3:11.

    Article  Google Scholar 

  6. Peccoud, Jean et al. (2008). Targeted development of registries of biological parts. PLoS ONE. Vol. 3(7): e2671.

    Article  PubMed  Google Scholar 

  7. Czar M.J., et al. (2009). Gene synthesis demystified. Trends Biotechnology. Vol. 27: 63–72.

    CAS  Google Scholar 

  8. Godiska R, Mead D, Dhodda V, Wu C, Hochstein R, Karsi A, Usdin K, Entezam A, Ravin N. (2010). Linear plasmid vector for cloning of repetitive or unstable sequences in Escherichia coli. Nucleic Acids Research. Vol. 38(6): e88.

    Article  PubMed  Google Scholar 

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Correspondence to A. Malcolm Campbell .

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© 2012 Springer Sceince+Business Media, LLC

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Ho-Shing, O., Lau, K.H., Vernon, W., Eckdahl, T.T., Campbell, A.M. (2012). Assembly of Standardized DNA Parts Using BioBrick Ends in E. coli . In: Peccoud, J. (eds) Gene Synthesis. Methods in Molecular Biology, vol 852. Humana Press. https://doi.org/10.1007/978-1-61779-564-0_6

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  • DOI: https://doi.org/10.1007/978-1-61779-564-0_6

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-563-3

  • Online ISBN: 978-1-61779-564-0

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