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Identification of HR-Inducing cDNAs from Plant Pathogens via a Gateway®-Compatible Binary Potato Virus X-Expression Vector

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 835))

Abstract

Identification of pathogen effectors that elicit a hypersensitive response (HR) in resistant plant hosts is essential to study disease resistance. In this method, it is described how to generate a cDNA library, how to transfer the library into a binary PVX-expression vector, and finally how to set up a high-throughput screen for HR-inducing cDNAs from plant pathogens.

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References

  1. Felix, G., Regenass, M., and Boller, T. (1993) Specific perception of subnanomolar concentrations of chitin fragments by tomato cells. Induction of extracellular alkalinization, changes in protein phosphorylation, and establishment of a refractory state. Plant J. 4, 307–316.

    Article  CAS  Google Scholar 

  2. Felix, G., Duran, J.D., Volko, S., Boller, T. (1999) Plants have a sensitive perception system for the most conserved domain of bacterial flagellin. Plant J. 18, 265–276.

    Article  PubMed  CAS  Google Scholar 

  3. Jones, J.D.G., and Dangl, J.L. (2006) The plant immune system. Nature 444, 323–329.

    Article  PubMed  CAS  Google Scholar 

  4. van Esse, H.P., Bolton, M.D., Stergiopoulos, I., de Wit, P.J.G.M., Thomma, B.P.H.J. (2007) The chitin–binding Cladosporium fulvum effector protein Avr4 is a virulence factor. Mol. Plant–Microbe interact. 20, 1092–1101.

    Google Scholar 

  5. van Esse, H.P., van ’t Klooster, J.W., Bolton, M.D., Yadeta, K.A., van Baarlen, P., Boeren, S., Vervoort, J., de Wit, P.J.G.M., Thomma, B.P.H.J. 2008. The Cladosporium fulvum virulence protein Avr2 inhibits host proteases required for basal defense. Plant Cell 20, 1948–1963.

    Google Scholar 

  6. de Jonge R, van Esse HP, Kombrink A, Shinya T, Desaki Y, Bours R, van der Krol S, Shibuya N, Joosten MHAJ, Thomma BPHJ. (2010) Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants. Science 20, 953–955.

    Article  Google Scholar 

  7. Flor, H.H. (1942) Inheritance of pathogenicity in Melampsora lini. Phytopathology 32, 653–669.

    Google Scholar 

  8. Greenberg, J. T., and Yao, N. (2004)  The role and regulation of programmed cell death in plant–pathogen interactions.  Cell. Microbiol.  6, 201–211.

    Article  PubMed  CAS  Google Scholar 

  9. Shen, Q., Saijo, Y., Mauch, S., Biskup, C., Bieri, S., Keller, B., Seki, H., Ülker, B., Somssich, I.E., and Schulze-Lefert, P. (2007) Nuclear activity of MLA immune receptors links isolate–specific and basal disease–resistance responses. Science 315, 1098–1103.

    Article  PubMed  CAS  Google Scholar 

  10. Tao, Y.  Xie, Z., Chena, W., Glazebrook, J., Changa, H., Han, B., Zhua, T., Zou, G., and Katagiri, F. (2003)  Quantitative nature of  Arabidopsis  responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell  15, 317–330.

    Article  PubMed  CAS  Google Scholar 

  11. Kim, M.G., da Cunha, L., McFall, A.J., Belkhadir, Y., DebRoy, S., Dangl, J.L., Mackey, D. (2005) Two Pseudomonas syringae type III effectors inhibit RIN4-regulated basal defense in Arabidopsis. Cell 121, 749–759.

    Article  PubMed  CAS  Google Scholar 

  12. Bos, J.I., Kanneganti, T.D., Young, C., Cakir, C., Huitema, E., Win, J., Armstrong, M.R., Birch, P.R., and S. Kamoun. (2006) The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant J. 48, 165–176.

    Article  PubMed  CAS  Google Scholar 

  13. Bolton MD, van Esse HP, Vossen JH, de Jonge R, Stergiopoulos I, Stulemeijer IJ, van den Berg GC, Borrás-Hidalgo O, Dekker HL, de Koster CG, de Wit PJGM, Joosten MHAJ, Thomma BPHJ. (2008) The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species. Mol. Microbiol. 119–136.

    Google Scholar 

  14. Houterman, P.M., Cornelissen, B.J.C., and Rep, M. (2008) Suppression of plant resistance gene-based immunity by a fungal effector, PLoS Pathog. 4, e1000061.

    Article  PubMed  Google Scholar 

  15. Takken, F.L.W., Luderer, R., Gabriels, S.H., Westerink, N., Lu, R., de Wit, P.J.G.M., and Joosten, M.H.A.J. (2000) A functional cloning strategy, based on a binary PVX–expression vector, to isolate HR–inducing cDNAs of plant pathogens. Plant J. 24, 275–283.

    Article  PubMed  CAS  Google Scholar 

  16. Torto, T.A., Li, S., Styer, A., Huitema, E., Testa, A., Gow, N.A.R., van West, P., and Kamoun, S. (2003) EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora. Genome Res. 13, 1675–1685.

    Article  PubMed  CAS  Google Scholar 

  17. Moreira, A., Jones, R.A.C., and Fribourg, C.E. (1980) Properties of a resistance-breaking strain of potato virus X. Ann. Appl. Biol. 95, 93–103.

    Article  Google Scholar 

  18. Chapman, S., Kavanagh, T., Baulcombe, D. (1992) Potato virus X as a vector for gene expression in plants. Plant J. 2, 549–557.

    Google Scholar 

  19. Jones L, Hamilton AJ, Voinnet O, Thomas CL, Maule AJ, Baulcombe DC. (1999) RNA-DNA interactions and DNA methylation in post-transcriptional gene silencing. Plant Cell 11, 2291–2301.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

H. P. V. E. is supported by a Veni grant of the Research Council for Earth and Life sciences (ALW) of the Netherlands Organization for Scientific Research (NWO). The author thanks Adrian Valli for kindly providing a Gateway®-compatible PVX-vector.

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Correspondence to H. Peter van Esse .

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van Esse, H.P. (2012). Identification of HR-Inducing cDNAs from Plant Pathogens via a Gateway®-Compatible Binary Potato Virus X-Expression Vector. In: Bolton, M., Thomma, B. (eds) Plant Fungal Pathogens. Methods in Molecular Biology, vol 835. Humana Press. https://doi.org/10.1007/978-1-61779-501-5_6

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  • DOI: https://doi.org/10.1007/978-1-61779-501-5_6

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-500-8

  • Online ISBN: 978-1-61779-501-5

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