Abstract
The determination of the stereochemistry of common and unusual amino acids is important in food chemistry, archeology, medicine, and life sciences, including such diverse areas as marine biology and extraterrestrial chemistry and has greatly contributed to our current knowledge in these fields.
To determine the stereochemistry of amino acids, many chromatographic methods have been developed and refined over the last decades. Here, we describe a state-of-the-art indirect chromatography-based LC-MS method. Diastereomers were formed from amino acids that were reacted with chiral derivatizing agents, such as Marfey’s reagent (FDAA), GITC, S-NIFE, and OPA-IBLC and separated on a reversed phase column using mass spectrometry compatible buffers.
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Atkins JF, and Gesteland R (2002) Biochemistry – The 22nd amino acid. Science 296:1409–1410
Bruckner H, and Westhauser T (2003) Chromatographic determination of L- and D-amino acids in plants. Amino Acids 24:43–55
Patzold R, and Bruckner H (2006) Gas chromatographic determination and mechanism of formation of D-amino acids occurring in fermented and roasted cocoa beans, cocoa powder, chocolate and cocoa shell. Amino Acids 31:63–72
Nagata Y et al (1998) Occurrence of peptidyl D-amino acids in soluble fractions of several eubacteria, archaea and eukaryotes. BBA-Gen Subjects 1379:76–82
Mor A, Delfour A, and Nicolas P (1991) Identification of a D-Alanine-Containing Polypeptide Precursor for the Peptide Opioid, Dermorphin. J Biol Chem 266:6264-6270
Fujii N (2002) D-amino acids in living higher organisms. Origins of Life and Evolution of the Biosphere 32:103–127
Hess S et al (2004) Chirality determination of unusual amino acids using precolumn derivatization and liquid chromatography-electrospray ionization mass spectrometry. J Chromatogr A 1035:211–219
Oku N et al (2004) Neamphamide A, a new HIV-inhibitory depsipeptide from the Papua New Guinea marine sponge Neamphius huxleyi. J Nat Prod 67:1407–1411
Davies-Coleman M T et al (2003) Isolation of homodolastatin 16, a new cyclic depsipeptide from a Kenyan collection of Lyngbya majuscula. J Nat Prod 66:712–715
Hashimoto A et al (1993) Embryonic-Development and Postnatal Changes in Free D-Aspartate and D-Serine in the Human Prefrontal Cortex. J Neurochem 61:348–351
Ratnayake A S et al (2006) Theopapuamide, a cyclic depsipeptide from a Papua New Guinea lithistid sponge Theonella swinhoei. J Nat Prod 69:1582–1586
Engel M H, and Macko S A (1997) Isotopic evidence for extraterrestrial non-racemic amino acids in the Murchison meteorite. Nature 389:265–268
Cronin J R, and Pizzarello S (1997) Enantiomeric excesses in meteoritic amino acids. Science 275:951–955
Marfey P (1984) Determination of D-Amino Acids. 2. Use of a Bifunctional Reagent, 1,5-Difluoro-2,4-Dinitrobenzene. Carlsberg Research Communications 49:591–596
Nimura N, Toyama A, and Kinoshita T (1984) Optical resolution of amino acid enantiomers by high-performance liquid chromatography. J Chromatogr A 316:547–552
Peter A, Vekes E, and Torok G (2000) Application of (S)-N-(4-nitrophenoxycarbonyl) phenylalanine methoxyethyl ester as a new chiral derivatizing agent for proteinogenic amino acid analysis by high-performance liquid chromatography. Chromatographia 52:821–826
Brückner H et al (1994) Liquid chromatographic determination of d- and l-amino acids by derivatization with o-phthaldialdehyde and chiral thiols: Applications with reference to biosciences. J Chromatogr A 666:259–273
Ong S E et al (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376–386
Blanco FJ et al (2001) Solid-state NMR data support a helix-loop-helix structural model for the N-terminal half of HIV-1 Rev in fibrillar form. J Mol Biol 313:845–859
Hess S, van Beek J, and Pannell L K (2002) Acid hydrolysis of silk fibroins and determination of the enrichment of isotopically labeled amino acids using precolumn derivatization and high-performance liquid chromatography-electrospray ionization-mass spectrometry. Anal Biochem 311:19–26
Graham R L J, and Hess S (2010) Mass Spectrometry in the Elucidation of the Glycoproteome of Bacterial Pathogens Curr Proteomics 7:57–81
Ford P W et al (1999) Papuamides A–D, HIV-Inhibitory and Cytotoxic Depsipeptides from the Sponges Theonella mirabilis and Theonella swinhoei Collected in Papua New Guinea. J Am Chem Soc 121:5899–5909
Cranfill D C, and Lipton M A (2007) Enantio- and Diastereoselective Synthesis of (R,R)-β-Methoxytyrosine. Org Let 9:3511–3513
Ng LT, Pascaud A, and Pascaud M (1987) Hydrochloric acid hydrolysis of proteins and determination of tryptophan by reversed-phase high-performance liquid chromatography. Anal Biochem 167:47–52
Fujii K et al (1997) A nonempirical method using LC/MS for determination of the absolute configuration of constituent amino acids in a peptide: Combination of Marfey’s method with mass spectrometry and its practical application. Anal Chem 69:5146–5151
Brückner H, and Gah C (1991) High-performance liquid chromatographic separation of dl-amino acids derivatized with chiral variants of Sanger’s reagent. J Chromatogr A 555:81–95
Fujii K et al (1997) A nonempirical method using LC/MS for determination of the absolute configuration of constituent amino acids in a peptide: Elucidation of limitations of Marfey’s method and of its separation mechanism. Anal Chem 69:3346–3352
Harada K et al (2001) Abnormal elution behavior of ornitine derivatized with 1-fluoro-2,4-dinitrophenyl-5-leucinamide in advanced Marfey’s method. J Chromatogr A 921:187–195
Kochhar S, and Christen P (1989) Amino acid analysis by high-performance liquid chromatography after derivatization with 1-fluoro-2,4-dinitrophenyl-5-L-alanine amide. Anal Biochem 178:17–21
B’Hymer C, Montes-Bayon M, and Caruso J A (2003) Marfey’s reagent: Past, present, and future uses of 1-fluoro-2,4-dinitrophenyl-5-L-alanine amide. J Sep Sci 26:7–19
Tian ZP et al (1991) Resolution of 2,3,4,6-Tetra-O-Acetyl-Beta-D-Glucopyranosylisothiocyanate Derivatives of Alpha-Methyl Amino-Acid Enantiomers by High-Performance Liquid-Chromatography. J Chromatogr 541:297–302
Mengerink Y et al (2002) Advances in the evaluation of the stability and characteristics of the amino acid and amine derivatives obtained with the o-phthaldialdehyde/3-mercaptopropionic acid and o-phthaldialdehyde/N-acetyl-L-cysteine reagents – High-performance liquid chromatography-mass spectrometry study. J Chromatogr A 949:99–124
Molnar-Perl I, and Vasanits A (1999) Stability and characteristics of the o-phthaldialdehyde/3-mercaptopropionic acid and o-phthaldialdehyde/N-acetyl-L-cysteine reagents and their amino acid derivatives measured by high-performance liquid chromatography. J Chromatogr A 835:73–91
Acknowledgments
This work was supported by the Intramural Program of the National Institute of Diabetes, Digestive and Kidney Diseases, Z01 DK070004-04, the Beckman Institute and the Betty and Gordon Moore Foundation.
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Hess, S. (2012). A Universal HPLC-MS Method to Determine the Stereochemistry of Common and Unusual Amino Acids. In: Alterman, M., Hunziker, P. (eds) Amino Acid Analysis. Methods in Molecular Biology, vol 828. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-445-2_7
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DOI: https://doi.org/10.1007/978-1-61779-445-2_7
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