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Evolution of Protein Stability Using Ribosome Display

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 805))

Abstract

The opportunity to enhance protein stability has a number of potential benefits for biological therapeutics – for example extending in vivo half-life, enabling a longer shelf life, reducing the propensity to aggregate, or enabling soluble expression. Engineering protein stability has been attempted empirically, rationally, and using directed evolution based on phage display. Ribosome display is a powerful in vitro technology for the selection and directed evolution of proteins. Ribosome display is typically used for the generation of high-affinity proteins and peptides. This method extends the utility of ribosome display to selecting for stability, defined as the propensity of a molecule to exist in its folded and active state.

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References

  1. Baneyx F (1999) Recombinant protein expression in Escherichia coli. Curr Opin Biotechnol 10, 411–421

    Article  PubMed  CAS  Google Scholar 

  2. Chiti F, Stefani M, Taddei N et al (2003) Rationalization of the effects of mutations on peptide and protein aggregation rates. Nature 424, 805–808

    Article  PubMed  CAS  Google Scholar 

  3. Marshall SA, Lazar GA, Chirino AJ et al (2003) Rational design and engineering of therapeutic proteins. Drug Discovery Today 8, 212–221

    Article  PubMed  CAS  Google Scholar 

  4. Tokurik N and Tawfik DS (2009) Stability effects of mutations and protein evolvability. Curr Opin Struct Bio. 19, 596–604

    Article  Google Scholar 

  5. Hanes J, Jermutus L, Plückthun A (2000) Selecting and evolving functional proteins in vitro by ribosome display. In: Abelson JN, and Simon MI (eds), Methods Enzymol., Academic Press, San Diego, p. 404

    Google Scholar 

  6. Thom G (2009) Ribosomal Display. In: Therapeutic Monoclonal Antibodies: From Bench to Clinic. An Z (ed) John Wiley & Sons Inc. Hoboken, NJ, USA

    Google Scholar 

  7. Zahnd C, Wyler E, Schwenk JM et al (2007) A designed ankyrin repeat protein evolved to picomolar affinity to Her2. J Mol Biol 369, 1015–1028.

    Article  PubMed  CAS  Google Scholar 

  8. Thom G, Cockroft AC, AG Buchanan et al (2006) Probing a protein-protein interaction by in vitro evolution. Proc Natl Acad Sci USA 103,7619–7624

    Article  PubMed  CAS  Google Scholar 

  9. Jermutus L, Honeggar A, Schwesinger F et al (2001) Tailoring in vitro evolution for protein affinity or stability. Proc Natl Acad Sci USA 98, 75–80

    Article  PubMed  CAS  Google Scholar 

  10. Buchanan A (2007) Unpublished US2007/0298430 A1

    Google Scholar 

  11. McCue JT (2009) Theory and Use of Hydrophobic Interaction Chromatography in Protein Purification Applications. Methods in Enzymology 463, p405–414

    Article  Google Scholar 

  12. Keefe AD and Szostak J (2001) Functional proteins from a random-sequence library. Nature 410, 715–718

    Article  PubMed  CAS  Google Scholar 

  13. Matsuura T and Plückthun A (2003) Selection based on the folding properties of proteins with ribosome display. FEBS Letters 539, 24–28

    Article  PubMed  CAS  Google Scholar 

  14. Ericsson UB, Hallberg BM, DeTitta GT et al (2006) Thermofluor-based high-throughput stability optimization of proteins for structural studies. Analytical Biochemisty 357, 289–298

    Article  CAS  Google Scholar 

  15. Chennamsetty N, Voynov V, Kayser V et al (2009) Design of therapeutic proteins with enhanced stability. Proc Natl Acad Sci. USA. 106, 11937–11942

    Article  PubMed  CAS  Google Scholar 

  16. Arakawa T, Philo JS, and Kita Y (2001) Kinetic and thermodynamic analysis of thermal unfolding of recombinant erythropoietin. Biosci Biotechnol Biochem. 65, 1321–1327

    Article  PubMed  CAS  Google Scholar 

  17. Bishop B, Koay DC, Sartorelli AC et al (2001) Reengineering granulocyte colony-stimulating factor for enhanced stability. J Biol Chem. 276, 33465–33470

    Article  PubMed  CAS  Google Scholar 

  18. Lou P, Hayes RJ, Chan C et al (2002) Development of a cytokine analog with enhanced stability using computational ultrahigh throughput screening. Protein Sci. 11, 1218–1226

    Article  Google Scholar 

  19. Douthwaite JA, Groves MA, Dufner P et al (2006) An improved method for an efficient and easily accessible eukaryotic ribosome display technology. Protein Eng. Design Selection. 19, 85–90

    Article  CAS  Google Scholar 

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Correspondence to Andrew Buchanan .

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Buchanan, A. (2012). Evolution of Protein Stability Using Ribosome Display. In: Douthwaite, J., Jackson, R. (eds) Ribosome Display and Related Technologies. Methods in Molecular Biology, vol 805. Springer, New York, NY. https://doi.org/10.1007/978-1-61779-379-0_11

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  • DOI: https://doi.org/10.1007/978-1-61779-379-0_11

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  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-1-61779-378-3

  • Online ISBN: 978-1-61779-379-0

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