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Probing Virus–Glycan Interactions Using Glycan Microarrays

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Carbohydrate Microarrays

Abstract

Glycan microarrays are surfaces that contain immobilized oligosaccharides or glycoconjugates and have proven useful in probing the interactions between glycan-binding proteins (GBPs) and individual glycans. Such glycan microarrays have been especially important in studying virus–glycan interactions, as most viruses express one or more GBPs important for pathogenesis. For studying interactions of influenza viruses with glycans, we describe protocols for fluorescent labeling of virus, addition of virus to a glycan microarray, analysis of a glycan microarray slide experiment, and interpretation of data.

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References

  1. Varki, A., Cummings, R. D., Esko, J. D., Freeze, H. H., Stanley, P., Bertozzi, C. R., Hart, G. W., and Etzler, M. E. (2009) Essentials of Glycobiology, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.

    Google Scholar 

  2. Nicholls, J. M., Chan, R. W. Y., Russell, R. J., Air, G. M., and Peiris, J. S. M. (2008) Evolving complexities of influenza virus and its receptors, Trends Microbiol 16, 149–157.

    Article  PubMed  CAS  Google Scholar 

  3. Stevens, J., Blixt, O., Glaser, L., Taubenberger, J. K., Palese, P., Paulson, J. C., and Wilson, I. A. (2006) Glycan microarray analysis of the hemagglutinins from modern and pandemic influenza viruses reveals different receptor specificities, J Mol Biol 355, 1143–1155.

    Article  PubMed  CAS  Google Scholar 

  4. Viswanathan, K., Chandrasekaran, A., Srinivasan, A., Raman, R., Sasisekharan, V., and Sasisekharan, R. (2010) Glycans as receptors for influenza pathogenesis, Glycoconj J 27, 561–570.

    Article  PubMed  CAS  Google Scholar 

  5. Blixt, O., Head, S., Mondala, T., Scanlan, C., Huflejt, M. E., Alvarez, R., Bryan, M. C., Fazio, F., Calarese, D., Stevens, J., Razi, N., Stevens, D. J., Skehel, J. J., van Die, I., Burton, D. R., Wilson, I. A., Cummings, R., Bovin, N., Wong, C. H., and Paulson, J. C. (2004) Printed covalent glycan array for ligand profiling of diverse glycan binding proteins, Proc Natl Acad Sci U S A 101, 17033–17038.

    Article  PubMed  CAS  Google Scholar 

  6. Amonsen, M., Smith, D. F., Cummings, R. D., and Air, G. M. (2007) Human parainfluenza viruses hPIV1 and hPIV3 bind oligosaccharides with alpha2-3-linked sialic acids that are distinct from those bound by H5 avian influenza virus hemagglutinin, J Virol 81, 8341–8345.

    Article  PubMed  CAS  Google Scholar 

  7. Kumari, K., Gulati, S., Smith, D. F., Gulati, U., Cummings, R. D., and Air, G. M. (2007) Receptor binding specificity of recent human H3N2 influenza viruses, Virol J 4, 42.

    Article  PubMed  Google Scholar 

  8. Gulati, S., Smith, D. F., and Air, G. M. (2009) Deletions of neuraminidase and resistance to oseltamivir may be a consequence of restricted receptor specificity in recent H3N2 influenza viruses, Virol J 6, 22.

    Article  PubMed  Google Scholar 

  9. Lepenies, B., and Seeberger, P. H. (2010) The promise of glycomics, glycan arrays and carbohydrate-based vaccines, Immunopharmacol Immunotoxicol 32, 196–207.

    Article  PubMed  CAS  Google Scholar 

  10. Liang, C. H., and Wu, C. Y. (2009) Glycan array: a powerful tool for glycomics studies, Expert Rev Proteomics 6, 631–645.

    Article  PubMed  CAS  Google Scholar 

  11. Disney, M. D., and Seeberger, P. H. (2004) The use of carbohydrate microarrays to study carbohydrate-cell interactions and to detect pathogens, Chem Biol 11, 1701–1707.

    Article  PubMed  CAS  Google Scholar 

  12. Liu, C., Eichelberger, M. C., Compans, R. W., and Air, G. M. (1995) Influenza type A virus neuraminidase does not play a role in viral entry, replication, assembly, or budding, J Virol 69, 1099–1106.

    PubMed  CAS  Google Scholar 

  13. Henrickson, K. J. (1995) Human Parainfluenza Viruses, In Diagnostic Procedures for Viral, Rickettsial, and Chlamydial Infections (Lennette, E. H., Lennette, D. A., and Lennette, E. T., Eds.), pp 481–494, American Public Health Association, Washington, DC.

    Google Scholar 

  14. WHO Manual on Animal Influenza Diagnosis and Surveillance, World Health Organization.

    Google Scholar 

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Correspondence to Richard D. Cummings .

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Heimburg-Molinaro, J. et al. (2012). Probing Virus–Glycan Interactions Using Glycan Microarrays. In: Chevolot, Y. (eds) Carbohydrate Microarrays. Methods in Molecular Biology, vol 808. Humana Press. https://doi.org/10.1007/978-1-61779-373-8_18

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  • DOI: https://doi.org/10.1007/978-1-61779-373-8_18

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-372-1

  • Online ISBN: 978-1-61779-373-8

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