Abstract
Proper control of mitochondrial turnover is critical for maintenance of cellular energetics under basal and stressed conditions, and for prevention of endogenous oxidative stress. Whole organelle turnover is mediated through macroautophagy, a process by which autophagosomes deliver mitochondria to the lysosome for hydrolytic degradation. While mitochondrial autophagy can occur as part of a nonselective upregulation of autophagy, selective degradation of damaged or unneeded mitochondria (mitophagy) is a rapidly growing area in development, cancer, and neurodegeneration, particularly with regard to Parkinson’s disease. Due to its dynamic nature, and the potential for regulatory perturbation by disease processes, no single technique is sufficient to evaluate mitophagy. Here, we describe several complementary techniques that include electron microscopy, single cell analysis of LC3 fluorescent puncta, and Western blot, each used in conjunction with a flux inhibitor to trap newly formed autophagosomes in order to monitor mitophagy in neuronal cells.
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References
Bueler, H., (2010) Mitochondrial dynamics, cell death and the pathogenesis of Parkinson’s disease. Apoptosis 15: 1336–1353.
Chu, C. T., J. H. Zhu, G. Cao, A. Signore, S. Wang & J. Chen, (2005) Apoptosis inducing factor mediates caspase-independent 1-methyl-4-phenylpyridinium toxicity in dopaminergic cells. Journal of neurochemistry 94: 1685–1695.
Jennings, J. J., Jr., J. H. Zhu, Y. Rbaibi, X. Luo, C. T. Chu & K. Kiselyov, (2006) Mitochondrial aberrations in mucolipidosis Type IV. The Journal of biological chemistry 281: 39041–39050.
Gomez-Lazaro, M., N. A. Bonekamp, M. F. Galindo, J. Jordan & M. Schrader, (2008) 6-Hydroxydopamine (6-OHDA) induces Drp1-dependent mitochondrial fragmentation in SH-SY5Y cells. Free radical biology & medicine 44: 1960–1969.
Suen, D. F., D. P. Narendra, A. Tanaka, G. Manfredi & R. J. Youle, Parkin overexpression selects against a deleterious mtDNA mutation in heteroplasmic cybrid cells. Proceedings of the National Academy of Sciences of the United States of America 107: 11835–11840.
Dagda, R. K., S. J. Cherra, 3rd, S. M. Kulich, A. Tandon, D. Park & C. T. Chu, (2009) Loss of PINK1 function promotes mitophagy through effects on oxidative stress and mitochondrial fission. The Journal of biological chemistry 284: 13843–13855.
Tolkovsky, A. M., L. Xue, G. C. Fletcher & V. Borutaite, (2002) Mitochondrial disappearance from cells: a clue to the role of autophagy in programmed cell death and disease? Biochimie 84: 233–240.
Chu, C. T., (2010) A pivotal role for PINK1 and autophagy in mitochondrial quality control: implications for Parkinson disease. Human molecular genetics 19: R28-37.
Knott, A. B. & E. Bossy-Wetzel, (2008) Impairing the mitochondrial fission and fusion balance: a new mechanism of neurodegeneration. Annals of the New York Academy of Sciences 1147: 283–292.
Chen, H. & D. C. Chan, (2009) Mitochondrial dynamics--fusion, fission, movement, and mitophagy--in neurodegenerative diseases. Human molecular genetics 18: R169-176.
Weber, T. A. & A. S. Reichert, (2010) Impaired quality control of mitochondria: aging from a new perspective. Experimental gerontology 45: 503–511.
Narendra, D., A. Tanaka, D. F. Suen & R. J. Youle, (2008) Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. The Journal of cell biology 183: 795–803.
Narendra, D. P., S. M. Jin, A. Tanaka, D. F. Suen, C. A. Gautier, J. Shen, M. R. Cookson & R. J. Youle, (2010) PINK1 Is Selectively Stabilized on Impaired Mitochondria to Activate Parkin. PLoS biology 8: e1000298.
Ziviani, E., R. N. Tao & A. J. Whitworth, (2010) Drosophila parkin requires PINK1 for mitochondrial translocation and ubiquitinates mitofusin. Proceedings of the National Academy of Sciences of the United States of America 107: 5018–5023.
Kawajiri, S., S. Saiki, S. Sato, F. Sato, T. Hatano, H. Eguchi & N. Hattori, (2010) PINK1 is recruited to mitochondria with parkin and associates with LC3 in mitophagy. FEBS letters 584: 1073–1079.
Novak, I., V. Kirkin, D. G. McEwan, J. Zhang, P. Wild, A. Rozenknop, V. Rogov, F. Lohr, D. Popovic, A. Occhipinti, A. S. Reichert, J. Terzic, V. Dotsch, P. A. Ney & I. Dikic, (2010) Nix is a selective autophagy receptor for mitochondrial clearance. EMBO reports 11: 45–51.
Kanki, T., K. Wang, Y. Cao, M. Baba & D. J. Klionsky, (2009) Atg32 is a mitochondrial protein that confers selectivity during mitophagy. Developmental cell 17: 98–109.
Tal, R., G. Winter, N. Ecker, D. J. Klionsky & H. Abeliovich, (2007) Aup1p, a yeast mitochondrial protein phosphatase homolog, is required for efficient stationary phase mitophagy and cell survival. The Journal of biological chemistry 282: 5617–5624.
Kissova, I., M. Deffieu, S. Manon & N. Camougrand, (2004) Uth1p is involved in the autophagic degradation of mitochondria. The Journal of biological chemistry 279: 39068–39074.
Zhu, J. H., C. Horbinski, F. Guo, S. Watkins, Y. Uchiyama & C. T. Chu, (2007) Regulation of autophagy by extracellular signal-regulated protein kinases during 1-methyl-4-phenylpyridinium-induced cell death. The American journal of pathology 170: 75–86.
Twig, G., A. Elorza, A. J. Molina, H. Mohamed, J. D. Wikstrom, G. Walzer, L. Stiles, S. E. Haigh, S. Katz, G. Las, J. Alroy, M. Wu, B. F. Py, J. Yuan, J. T. Deeney, B. E. Corkey & O. S. Shirihai, (2008) Fission and selective fusion govern mitochondrial segregation and elimination by autophagy. The EMBO journal 27: 433–446.
Kundu, M., T. Lindsten, C. Y. Yang, J. Wu, F. Zhao, J. Zhang, M. A. Selak, P. A. Ney & C. B. Thompson, (2008) Ulk1 plays a critical role in the autophagic clearance of mitochondria and ribosomes during reticulocyte maturation. Blood 112: 1493–1502.
Chu, C. T., J. Zhu & R. Dagda, (2007) Beclin 1-independent pathway of damage-induced mitophagy and autophagic stress: implications for neurodegeneration and cell death. Autophagy 3: 663–666.
Zhang, J., M. S. Randall, M. R. Loyd, F. C. Dorsey, M. Kundu, J. L. Cleveland & P. A. Ney, (2009) Mitochondrial clearance is regulated by Atg7-dependent and -independent mechanisms during reticulocyte maturation. Blood 114: 157–164.
Wright, G., K. Terada, M. Yano, I. Sergeev & M. Mori, (2001) Oxidative stress inhibits the mitochondrial import of preproteins and leads to their degradation. Experimental cell research 263: 107–117.
Kimura, S., T. Noda & T. Yoshimori, (2007) Dissection of the autophagosome maturation process by a novel reporter protein, tandem fluorescent-tagged LC3. Autophagy 3: 452–460.
Chu, C. T., E. D. Plowey, R. K. Dagda, R. W. Hickey, S. J. Cherra, 3rd & R. S. Clark, (2009) Autophagy in neurite injury and neurodegeneration: in vitro and in vivo models. Methods in enzymology 453: 217–249.
Cherra, S. J., S.M. Kulich, G. Uechi, M. Balasubramani, J. Mountzouris, B.W. Day & C.T. Chu, (2010) Regulation of the autophagy protein LC3 by phosphorylation. J. Cell. Biol. 190: 533–539.
Dagda, R. K., J. Zhu, S. M. Kulich & C. T. Chu, (2008) Mitochondrially localized ERK2 regulates mitophagy and autophagic cell stress: implications for Parkinson’s disease. Autophagy 4: 770–782.
Klionsky, D. J., H. Abeliovich, P. Agostinis, D. K. Agrawal, G. Aliev, D. S. Askew, M. Baba, E. H. Baehrecke, B. A. Bahr, A. Ballabio, B. A. Bamber, D. C. Bassham, E. Bergamini, X. Bi, M. Biard-Piechaczyk, J. S. Blum, D. E. Bredesen, J. L. Brodsky, J. H. Brumell, U. T. Brunk, W. Bursch, N. Camougrand, E. Cebollero, F. Cecconi, Y. Chen, L. S. Chin, A. Choi, C. T. Chu, J. Chung, P. G. Clarke, R. S. Clark, S. G. Clarke, C. Clave, J. L. Cleveland, P. Codogno, M. I. Colombo, A. Coto-Montes, J. M. Cregg, A. M. Cuervo, J. Debnath, F. Demarchi, P. B. Dennis, P. A. Dennis, V. Deretic, R. J. Devenish, F. Di Sano, J. F. Dice, M. Difiglia, S. Dinesh-Kumar, C. W. Distelhorst, M. Djavaheri-Mergny, F. C. Dorsey, W. Droge, M. Dron, W. A. Dunn, Jr., M. Duszenko, N. T. Eissa, Z. Elazar, A. Esclatine, E. L. Eskelinen, L. Fesus, K. D. Finley, J. M. Fuentes, J. Fueyo, K. Fujisaki, B. Galliot, F. B. Gao, D. A. Gewirtz, S. B. Gibson, A. Gohla, A. L. Goldberg, R. Gonzalez, C. Gonzalez-Estevez, S. Gorski, R. A. Gottlieb, D. Haussinger, Y. W. He, K. Heidenreich, J. A. Hill, M. Hoyer-Hansen, X. Hu, W. P. Huang, A. Iwasaki, M. Jaattela, W. T. Jackson, X. Jiang, S. Jin, T. Johansen, J. U. Jung, M. Kadowaki, C. Kang, A. Kelekar, D. H. Kessel, J. A. Kiel, H. P. Kim, A. Kimchi, T. J. Kinsella, K. Kiselyov, K. Kitamoto, E. Knecht, et al., (2008) Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy 4: 151–175.
Plowey, E. D., S. J. Cherra, 3rd, Y. J. Liu & C. T. Chu, (2008) Role of autophagy in G2019S-LRRK2-associated neurite shortening in differentiated SH-SY5Y cells. Journal of neurochemistry 105: 1048–1056.
Shacka, J. J., B. J. Klocke, M. Shibata, Y. Uchiyama, G. Datta, R. E. Schmidt & K. A. Roth, (2006) Bafilomycin A1 inhibits chloroquine-induced death of cerebellar granule neurons. Molecular pharmacology 69: 1125–1136.
Tolkovsky, A. M., (2009) Mitophagy. Biochimica et biophysica acta 1793: 1508–1515.
Buckman, J. F., H. Hernandez, G. J. Kress, T. V. Votyakova, S. Pal & I. J. Reynolds, (2001) MitoTracker labeling in primary neuronal and astrocytic cultures: influence of mitochondrial membrane potential and oxidants. Journal of neuroscience methods 104: 165–176.
Lang-Rollin, I. C., H. J. Rideout, M. Noticewala & L. Stefanis, (2003) Mechanisms of caspase-independent neuronal death: energy depletion and free radical generation. J Neurosci 23: 11015–11025.
Rantanen, A., M. Jansson, A. Oldfors & N. G. Larsson, (2001) Downregulation of Tfam and mtDNA copy number during mammalian spermatogenesis. Mamm Genome 12: 787–792.
Fisher, R. P., J. N. Topper & D. A. Clayton, (1987) Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements. Cell 50: 247–258.
Acknowledgments
This work was supported in part by the National Institutes of Health (AG026389, NS065789). CTC is recipient of an AFAR/Ellison Medical Foundation Julie Martin Mid-Career Award in Aging Research.
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Zhu, J., Dagda, R.K., Chu, C.T. (2011). Monitoring Mitophagy in Neuronal Cell Cultures. In: Manfredi, G., Kawamata, H. (eds) Neurodegeneration. Methods in Molecular Biology, vol 793. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-328-8_21
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DOI: https://doi.org/10.1007/978-1-61779-328-8_21
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