Abstract
Protocols developed for plastome engineering in Nicotiana tabacum rely on biolistic delivery of the transforming DNA to chloroplasts in intact leaf tissue; integration of the foreign DNA into the plastid genome by homologous recombination via flanking plastid DNA (ptDNA) targeting regions; and gradual dilution of non-transformed ptDNA during cultivation in vitro. Plastid transformation in Arabidopsis was obtained by combining the tobacco leaf transformation protocol with Arabidopsis-specific tissue culture and plant regeneration protocols. Because the leaf cells in Arabidopsis are polyploid, this protocol yielded sterile plants. Meristematic cells in a shoot apex or cells of a developing embryo are diploid. Therefore, we developed a regulated embryogenic root culture system that will generate diploid tissue for plastid transformation. This embryogenic culture system is created by steroid-inducible expression of the BABY BOOM transcription factor. Plastid transformation in Arabidopsis will enable the probing of plastid gene function, and the characterization of posttranscriptional mechanisms of gene regulation and the regulatory interactions of plastid and nuclear genes.
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References
Zoschke, R., Liere, K., and Börner, T. (2007) From seedling to mature plant: Arabidopsis plastidial genome copy number, RNA accumulation and transcription are differentially regulated during leaf development. Plant J. 50, 710–722.
Pyke, K. A., and Leech, R. M. (1994) A genetic analysis of chloroplast division and expansion in Arabidopsis thaliana. Plant Physiol. 104, 201–207.
Sato, S., Nakamura, Y., Kaneko, T., Asamizu, E., and Tabata, S. (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res. 6, 283–290.
Provan, J., and Campanella, J. J. (2003) Patterns of cytoplasmic variation in Arabidopsis thaliana (Brassicaceae) revealed by polymorphic chloroplast microsatellites. Syst. Bot. 28, 578–583.
Sall, T., Jakobsson, M., Lind-Hallden, C., and Hallden, C. (2003) Chloroplast DNA indicates a single origin of the allotetraploid Arabidopsis suecica. J. Evol. Biol. 16, 1019–1029.
Azhagiri, A., and Maliga, P. (2007) DNA markers define plastid haplotypes in Arabidopsis thaliana. Curr. Genet. 51, 269–275.
Unseld, M., Marienfeld, J. R., Brandt, P., and Brennicke, A. (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet. 15, 57–61.
Preuten, T., Cincu, E., Fuchs, J., Zoschke, R., Liere, K., and Börner, T. (2010) Fewer genes than organelles: extremely low and variable gene copy numbers in mitochondria of somatic plant cells. Plant J., in press.
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796–815.
Alonso, J. M., Stepanova, A. N., Leisse, T. J., Kim, C. J., Chen, H., Shinn, P., Stevenson, D. K., Zimmerman, J., Barajas, P., Cheuk, R., Gadrinab, C., Heller, C., Jeske, A., Koesema, E., Meyers, C. C., Parker, H., Prednis, L., Ansari, Y., Choy, N., Deen, H., Geralt, M., Hazari, N., Hom, E., Karnes, M., Mulholland, C., Ndubaku, R., Schmidt, I., Guzman, P., Aguilar-Henonin, L., Schmid, M., Weigel, D., Carter, D. E., Marchand, T., Risseeuw, E., Brogden, D., Zeko, A., Crosby, W. L., Berry, C. C., and Ecker, J. R. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301, 653–657.
Clough, S. J., and Bent, A. F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735–743.
Sikdar, S. R., Serino, G., Chaudhuri, S., and Maliga, P. (1998) Plastid transformation in Arabidopsis thaliana. Plant Cell Rep. 18, 20–24.
Remacle, C., Cardol, P., Coosemans, N., Gaisne, M., and Bonnefoy, N. (2006) High-efficiency biolistic transformation of Chlamydomonas mitochondria can be used to insert mutations in complex I genes. Proc. Natl. Acad. Sci. USA 103, 4771–4776.
Lutz, K. A., Svab, Z., and Maliga, P. (2006) Construction of marker-free transplastomic tobacco using the Cre-loxP site-specific recombination system. Nat. Protocols 1, 900–910.
Lutz, K. A., and Maliga, P. (2007) Transformation of the plastid genome to study RNA editing. Methods Enzymol. 424, 501–518.
Maliga, P., and Svab, Z. (2010) Engineering the plastid genome of Nicotiana sylvestris, a diploid model species for plastid genetics. In, Plant Chromosome Engineering: Methods and Protocols (Birchler, J. J., ed.), Humana Press, Totowa, NJ, USA, in press.
Svab, Z., and Maliga, P. (1993) High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene. Proc. Natl. Acad. Sci. USA 90, 913–917.
Carrer, H., Hockenberry, T. N., Svab, Z., and Maliga, P. (1993) Kanamycin resistance as a selectable marker for plastid transformation in tobacco. Mol. Gen. Genet. 241, 49–56.
Huang, F. C., Klaus, S. M. J., Herz, S., Zuo, Z., Koop, H. U., and Golds, T. J. (2002) Efficient plastid transformation in tobacco using the aphA-6 gene and kanamycin selection. Mol. Genet. Genomics 268, 19–27.
Lutz, K., Corneille, S., Azhagiri, A. K., Svab, Z., and Maliga, P. (2004) A novel approach to plastid transformation utilizes the phiC31 phage integrase. Plant J. 37, 906–913.
Barone, P., Zhang, X. H., and Widholm, J. M. (2009) Tobacco plastid transformation using the feedback-insensitive anthranilate synthase [α]-subunit of tobacco (ASA2) as a new selectable marker. J. Exp. Bot. 60, 3195–3202.
Galbraight, D. W., Harkins, K. R., and Knapp, S. (1991) Systemic endopolyploidy in Arabidopsis thaliana. Plant Physiol. 96, 985–989.
Melaragno, J. E., Mehrotra, B., and Coleman, A. W. (1993) Relationship between endopolyploidy and cell size in epidermal tissue of Arabidopsis. Plant Cell 5, 1661–1668.
Nole-Wilson, S., Tranby, T. L., and Krizek, B. A. (2005) AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states. Plant Mol. Biol. 57, 613–628.
Riechmann, J. L., Heard, J., Martin, G., Reuber, L., Jiang, C.-Z., Keddie, J., Adam, L., Pineda, O., Ratcliffe, O. J., Samaha, R. R., Creelman, R., Pilgrim, M., Broun, P., Zhang, J. Z., Ghandehari, D., Sherman, B. K., and Yu, G. L. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290, 2105–2110.
Boutilier, K., Offringa, R., Sharma, V. K., Kieft, H., Ouellet, T., Zhang, L., Hattori, J., Liu, C. M., van Lammeren, A. A. M., Miki, B. L. A., Custers, J. B. M., and van Lookeren Campagne, M. M. (2002) Ectopic expression of BABY BOOM triggers a conversion of vegetative to embryonic growth. Plant Cell 14, 1737–1749.
Lloyd, A. M., Schena, M., Walbot, V., and Davis, R. W. (1994) Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator. Science 266, 436–439.
Srinivasan, C., Liu, Z., Heidmann, I., Supena, E. D., Fukuoka, H., Joosen, R., Lambalk, J., Angenent, G., Scorza, R., Custers, J. B., and Boutilier, K. (2007) Heterologous expression of the BABY BOOM AP2/ERF transcription factor enhances the regeneration capacity of tobacco (Nicotiana tabacum L.). Planta 225, 341–351.
Zuo, J., and Chua, N. H. (2000) Chemical-inducible systems for regulated expression of plant genes. Curr. Opin. Biotechnol. 11, 146–151.
Cheng, L., Li, H. P., Qu, B., Huang, T., Tu, J. X., Fu, T. D., and Liao, Y. C. (2010) Chloroplast transformation of rapeseed (Brassica napus) by particle bombardment of cotyledons. Plant Cell Rep. 29, 371–381.
Hou, B. K., Zhou, Y. H., Wan, L. H., Zhang, Z. L., Shen, G. F., Chen, Z. H., and Hu, Z. M. (2003) Chloroplast transformation in oilseed rape. Transgenic Res. 12, 111–114.
Liu, C. W., Lin, C. C., Chen, J. J., and Tseng, M. J. (2007) Stable chloroplast transformation in cabbage (Brassica oleracea L. var. capitata L.) by particle bombardment. Plant Cell Rep. 26, 1733–1744.
Nugent, G. D., Coyne, S., Nguyen, T. T., Kavanagh, T. A., and Dix, P. J. (2006) Nuclear and plastid transformation of Brassica oleracea var. botrytis (cauliflower) using PEG-mediated uptake into protoplasts. Plant Sci. 170, 135–142.
Skarjinskaia, M., Svab, Z., and Maliga, P. (2003) Plastid transformation in Lesquerella fendleri, an oilseed Brassicacea. Transgenic Res. 12, 115–122.
Bock, R. (2007) Plastid biotechnology: prospects for herbicide and insect resistance, metabolic engineering and molecular farming. Curr. Opin. Biotechnol. 18, 100–106.
Daniell, H., Kumar, S., and Dufourmantel, N. (2005) Breakthrough in chloroplast genetic engineering of agronomically important crops. Trends Biotechnol. 23, 238–245.
Zuo, J., Niu, Q. W., and Chua, N. H. (2002) The WUSCHEL gene promotes vegetative-to-embryonic transition in Arabidopsis. Plant J. 30, 349–359.
Marton, L., and Browse, J. (1991) Facile transformation of Arabidopsis. Plant Cell. Rep. 10, 235–239.
Murashige, T., and Skoog, F. (1962) A revised medium for the growth and bioassay with tobacco tissue culture. Physiol. Plant 15, 473–497.
Jefferson, R. A., Kavanagh, T. A., and Bevan, M. W. (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6, 3901–3907.
Gallagher, S. R. (1992) GUS Protocols: Using the GUS Gene as a Reporter of Gene Expression. Academic Press, San Diego, CA, USA.
Acknowledgments
This research was supported by Grant MCB-039958 from the NSF Eukaryotic Genetics Program. K.A.L. was the recipient of a Charles and Johanna Busch Predoctoral Fellowship.
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Lutz, K.A., Azhagiri, A., Maliga, P. (2011). Transplastomics in Arabidopsis: Progress Toward Developing an Efficient Method. In: Jarvis, R. (eds) Chloroplast Research in Arabidopsis. Methods in Molecular Biology, vol 774. Humana Press. https://doi.org/10.1007/978-1-61779-234-2_9
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DOI: https://doi.org/10.1007/978-1-61779-234-2_9
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