Abstract
Nitrogenase-like dark operative protochlorophyllide oxidoreductase (DPOR) is involved in the two-electron reduction of protochlorophyllide to form chlorophyllide during chlorophyll biosynthesis. Formation of bacteriochlorophyll additionally requires a structurally related enzyme system which is termed chlorophyllide oxidoreductase (COR). During DPOR catalysis, the homodimeric subunit ChlL2 transfers electrons to the corresponding heterotetrameric catalytic subunit (ChlN/ChlB)2. Analogously, subunit BchX2 of the COR enzymes delivers electrons to subunit (BchY/BchZ)2. The ChlL2 protein is a dynamic switch protein triggering the ATP-dependent transfer of electrons via a [4Fe–4S] cluster onto a second [4Fe–4S] cluster located on subunit (ChlN/ChlB)2. This initial electron transfer step of DPOR catalysis clearly resembles nitrogenase catalysis. However, the subsequent substrate reduction process was proposed to be unrelated since no molybdenum-containing cofactor or a P-cluster equivalent is employed. To investigate the transient interaction of both subcomplexes ChlL2 and (ChlN/ChlB)2 and the resulting electron transfer processes, the ternary DPOR enzyme holocomplex was trapped as an octameric (ChlN/ChlB)2(ChlL2)2 complex after incubation with non-hydrolyzable ATP analogs. Electron paramagnetic resonance spectroscopic experiments of various DPOR complexes in combination with circular dichroism spectroscopic experiments of the ChlL2 protein revealed a detailed redox catalytic cycle for nucleotide-dependent DPOR catalysis.
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References
Field CB, Behrenfeld MJ, Randerson JT et al (1998) Primary production of the biosphere: integrating terrestrial and oceanic components. Science 281:237–240
Bröcker MJ, Virus S, Ganskow S et al (2008) ATP-driven reduction by dark-operative protochlorophyllide oxidoreductase from chlorobium tepidum mechanistically resembles nitrogenase catalysis. J Biol Chem 283:10559–10567
Burke DH, Hearst JE, Sidow A (1993) Early evolution of photosynthesis: clues from nitrogenase and chlorophyll iron proteins. Proc Natl Acad Sci USA 90:7134–7138
Fujita Y, Matsumoto H, Takahashi Y et al (1993) Identification of a nifDK-like gene (ORF467) involved in the biosynthesis of chlorophyll in the cyanobacterium Plectonema boryanum. Plant Cell Physiol 34:305–314
Beale SI (1999) Enzymes of chlorophyll biosynthesis. Photosyn Res 60:43–73
Belyaeva OB, Griffiths WT, Kovalev JV et al (2001) Participation of free radicals in photoreduction of protochlorophyllide to chlorophyllide in an artificial pigment-protein complex. Biochemistry (Moscow) 66:173–177
Heyes DJ, Hunter CN, van Stokkum IH et al (2003) Ultrafast enzymatic reaction dynamics in protochlorophyllide oxidoreductase. Nat Struct Biol 10:491–492
Heyes DJ, Ruban AV, Wilks HM et al (2002) Enzymology below 200 K: the kinetics and thermodynamics of the photochemistry catalyzed by protochlorophyllide oxidoreductase. Proc Natl Acad Sci USA 99:11145–11150
Rüdiger W (2003) The last steps of chlorophyll biosynthesis. In: Kadish KM, Smith KM, Guilard R (eds) Porphyrin Handbook, Chlorophylls and Bilins: Biosynthesis, Synthesis, and degradation, pp. 71–108. Academic, New York, NY
Masuda T, Takamiya K (2004) Novel insights into the enzymology, regulation and physiological functions of light-dependent protochlorophyllide oxidoreductase in angiosperms. Photosyn Res 81:1–29
Apel K (2001) Chlorophyll Biosynthesis – metabolism and strategies of higher plants to avoid photooxidative stress. In: Aro EM, Anderson B (eds) Regulation of Photosynthesis, pp. 235–252. Kluwer, Dordrecht
Fujita Y (1996) Protochlorophyllide reduction: a key step in the greening of plants. Plant Cell Physiol 37:411–421
Schoefs B (2001) The protochlorophyllide-chlorophyllide cycle. Photosyn Res 70:257–271
Suzuki JY, Bollivar DW, Bauer CE (1997) Genetic analysis of chlorophyll biosynthesis. Annu Rev Genet 31:61–89
Bollivar DW, Suzuki JY, Beatty JT et al (1994) Directed mutational analysis of bacteriochlorophyll a biosynthesis in Rhodobacter capsulatus. J Mol Biol 237:622–640
Sarma R, Barney BM, Hamilton TL et al (2008) Crystal structure of the L protein of Rhodobacter sphaeroides light-independent protochlorophyllide reductase with MgADP bound: a homologue of the nitrogenase Fe protein. Biochemistry 47:13004–13015
Fujita Y, Bauer CE (2000) Reconstitution of light-independent protochlorophyllide reductase from purified bchl and BchN-BchB subunits. In vitro confirmation of nitrogenase-like features of a bacteriochlorophyll biosynthesis enzyme. J Biol Chem 275:23583–23588
Wätzlich D, Bröcker MJ, Uliczka F et al (2009) Chimeric nitrogenase-like enzymes of (bacterio)chlorophyll biosynthesis. J Biol Chem 284:15530–15540
Bröcker MJ, Waetzlich D, Saggu M et al (2010) Biosynthesis of (bacterio)chlorophylls: ATP-dependent transient subunit interaction and electron transfer of dark operative protochlorophyllide Oxidoreductase. J Biol Chem 285:8268–8277
Igarashi RY, Seefeldt LC (2003) Nitrogen fixation: the mechanism of the Mo-dependent nitrogenase. Crit Rev Biochem Mol Biol 38:351–384
Howard JB, Rees DC (1994) Nitrogenase: a nucleotide-dependent molecular switch. Annu Rev Biochem 63:235–264
Bröcker MJ, Wätzlich D, Uliczka F et al (2008) Substrate recognition of nitrogenase-like dark operative protochlorophyllide oxidoreductase from Prochlorococcus marinus. J Biol Chem 283:29873–29881
Rainbird RM, Hitz WD, Hardy RW (1984) Experimental determination of the respiration associated with soybean/rhizobium nitrogenase function, nodule maintenance, and total nodule nitrogen fixation. Plant Physiol 75:49–53
Rees DC, Howard JB (2000) Nitrogenase: standing at the crossroads. Curr Opin Chem Biol 4:559–566
Erickson JA, Nyborg AC, Johnson JL et al (1999) Enhanced efficiency of ATP hydrolysis during nitrogenase catalysis utilizing reductants that form the all-ferrous redox state of the Fe protein. Biochemistry 38:14279–14285
Nomata J, Ogawa T, Kitashima M et al (2008) NB-protein (BchN-BchB) of dark operative protochlorophyllide reductase is the catalytic component containing oxygen-tolerant Fe-S clusters. FEBS Lett 582:1346–1350
Walther J, Bröcker MJ, Wätzlich D et al (2009) Protochlorophyllide: a new photosensitizer for the photodynamic inactivation of Gram-positive and Gram-negative bacteria. FEMS Microbiol Lett 290:156–163
Nomata J, Kitashima M, Inoue K et al (2006) Nitrogenase Fe protein-like Fe-S cluster is conserved in L-protein (BchL) of dark-operative protochlorophyllide reductase from Rhodobacter capsulatus. FEBS Lett 580:6151–6154
Kim EJ, Kim JS, Lee IH et al (2008) Superoxide generation by chlorophyllide a reductase of Rhodobacter sphaeroides. J Biol Chem 283:3718–3730
Raymond J, Siefert JL, Staples CR et al (2004) The natural history of nitrogen fixation. Mol Biol Evol 21:541–554
Staples CR, Lahiri S, Raymond J et al (2007) Expression and association of group IV nitrogenase NifD and NifH homologs in the non-nitrogen-fixing Archaeon Methanocaldococcus jannaschii. J Bacteriol 189:7392–7398
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Moser, J., Bröcker, M.J. (2011). Enzymatic Systems with Homology to Nitrogenase. In: Ribbe, M. (eds) Nitrogen Fixation. Methods in Molecular Biology, vol 766. Humana Press. https://doi.org/10.1007/978-1-61779-194-9_5
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DOI: https://doi.org/10.1007/978-1-61779-194-9_5
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