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Chemical Screening with Zebrafish Embryos

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Drug Design and Discovery

Part of the book series: Methods in Molecular Biology ((MIMB,volume 716))

Abstract

Functional chemicals are very useful tools for molecular biology studies. Due to its small size, large progeny clutch, and embryonic transparency, zebrafish serves as a superb in vivo animal model for chemical compound screens and characterization. During zebrafish embryogenesis, multiple developmental phenotypes can be easily examined under the microscope, therefore allowing a more comprehensive evaluation for identifying novel functional chemicals than cell-based assays. Ever since the first zebrafish-based chemical screen was conducted in the year 2000, many functional chemicals have been discovered using this strategy. In this chapter, we describe how to perform a typical zebrafish-based chemical screen and discuss the details of the protocol by using the example of the identification and characterization of two new Smo inhibitors with a Gli:GFP transgenic line.

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References

  1. Elliott, D.A. and Brand, A.H. (2008) The GAL4 system: a versatile system for the expression of genes. Methods Mol Biol. 420: 79–95.

    Article  PubMed  CAS  Google Scholar 

  2. Frese, K.K. and Tuveson, D.A. (2007) Maximizing mouse cancer models. Nat Rev Cancer. 7: 645–658.

    Article  PubMed  CAS  Google Scholar 

  3. Zhong, H., Liu, N. and Lin, S. (2009) Zebrafish Models for Human Diseases and Drug Discovery. In: Ekins S and Xu JJ (eds) Drug Efficacy, Safety, and Biologics Discovery: Emerging Technologies and Tools. Wiley: Hoboken. p. 115–133.

    Google Scholar 

  4. Peterson, R.T., Link, B.A., Dowling, J.E. and Schreiber, S.L. (2000) Small molecule developmental screens reveal the logic and timing of vertebrate development. Proc Natl Acad Sci U S A. 97: 12965–12969.

    Article  PubMed  CAS  Google Scholar 

  5. Kaufman, C.K., White, R.M. and Zon, L. (2009) Chemical genetic screening in the zebrafish embryo. Nat Protoc. 4: 1422–1432.

    Article  PubMed  CAS  Google Scholar 

  6. Peterson, R.T., Shaw, S.Y., Peterson, T.A., Milan, D.J., Zhong, T.P., Schreiber, S.L., MacRae, C.A. and Fishman, M.C. (2004) Chemical suppression of a genetic mutation in a zebrafish model of aortic coarctation. Nat Biotechnol. 22: 595–599.

    Article  PubMed  CAS  Google Scholar 

  7. Stern, H.M., Murphey, R.D., Shepard, J.L., Amatruda, J.F., Straub, C.T., Pfaff, K.L., Weber, G., Tallarico, J.A., King, R.W. and Zon, L.I. (2005) Small molecules that delay S phase suppress a zebrafish bmyb mutant. Nat Chem Biol. 1: 366–370.

    Article  PubMed  CAS  Google Scholar 

  8. Goessling, W., North, T.E., Loewer, S., Lord, A.M., Lee, S., Stoick-Cooper, C.L., Weidinger, G., Puder, M., Daley, G.Q., Moon, R.T. and Zon, L.I. (2009) Genetic interaction of PGE2 and Wnt signaling regulates developmental specification of stem cells and regeneration. Cell. 136: 1136–1147.

    Article  PubMed  CAS  Google Scholar 

  9. Yeh, J.R., Munson, K.M., Elagib, K.E., Goldfarb, A.N., Sweetser, D.A. and Peterson, R.T. (2009) Discovering chemical modifiers of oncogene-regulated hematopoietic differentiation. Nat Chem Biol. 5: 236–243.

    Article  PubMed  CAS  Google Scholar 

  10. Yang, H., Xiang, J., Wang, N., Zhao, Y., Hyman, J., Jiang, J., Chen, J.K., Yang, Z. and Lin, S. (2009) Converse conformational control of smoothened activity by structurally related small molecules. J Biol Chem. 284: 20876–20884.

    Article  PubMed  CAS  Google Scholar 

  11. Mayer, T.U. (2003) Chemical genetics: tailoring tools for cell biology. Trends Cell Biol. 13: 270–277.

    Article  PubMed  CAS  Google Scholar 

  12. Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B. and Schilling, T.F. (1995) Stages of embryonic development of the zebrafish. Dev Dyn. 203: 253–310.

    Article  PubMed  CAS  Google Scholar 

  13. Jacob, L. and Lum, L. (2007) Deconstructing the hedgehog pathway in development and disease. Science. 318: 66–68.

    Article  PubMed  CAS  Google Scholar 

  14. Theunissen, J.W. and de Sauvage, F.J. (2009) Paracrine Hedgehog signaling in cancer. Cancer Res. 69: 6007–6010.

    Article  PubMed  CAS  Google Scholar 

  15. Von Hoff, D.D., LoRusso, P.M., Rudin, C.M., Reddy, J.C., Yauch, R.L., Tibes, R., Weiss, G.J., Borad, M.J., Hann, C.L., Brahmer, J.R., Mackey, H.M., Lum, B.L., Darbonne, W.C., Marsters, J.C., Jr., de Sauvage, F.J. and Low, J.A. (2009) Inhibition of the hedgehog pathway in advanced basal-cell carcinoma. N Engl J Med. 361: 1164–1172.

    Article  Google Scholar 

  16. Yauch, R.L., Dijkgraaf, G.J., Alicke, B., Januario, T., Ahn, C.P., Holcomb, T., Pujara, K., Stinson, J., Callahan, C.A., Tang, T., Bazan, J.F., Kan, Z., Seshagiri, S., Hann, C.L., Gould, S.E., Low, J.A., Rudin, C.M. and de Sauvage, F.J. (2009) Smoothened mutation confers resistance to a hedgehog pathway inhibitor in medulloblastoma. Science. 326: 572–574.

    Article  PubMed  CAS  Google Scholar 

  17. Frank-Kamenetsky, M., Zhang, X.M., Bottega, S., Guicherit, O., Wichterle, H., Dudek, H., Bumcrot, D., Wang, F.Y., Jones, S., Shulok, J., Rubin, L.L. and Porter, J.A. (2002) Small-molecule modulators of Hedgehog signaling: identification and characterization of Smoothened agonists and antagonists. J Biol. 1: 10.

    Article  PubMed  Google Scholar 

  18. Chen, J.K., Taipale, J., Young, K.E., Maiti, T. and Beachy, P.A. (2002) Small molecule modulation of Smoothened activity. Proc Natl Acad Sci U S A. 99: 14071–14076.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

We gratefully acknowledge support from the 973 Program of MOST of P. R. China (2009CB941203) and Shenzhen Science and Technology Key Laboratory Promotion Fund. We thank Zahra Tehrani for reading and editing the manuscript.

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Correspondence to Hanbing Zhong .

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© 2011 Springer Science+Business Media, LLC

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Zhong, H., Lin, S. (2011). Chemical Screening with Zebrafish Embryos. In: Satyanarayanajois, S. (eds) Drug Design and Discovery. Methods in Molecular Biology, vol 716. Humana Press. https://doi.org/10.1007/978-1-61779-012-6_12

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  • DOI: https://doi.org/10.1007/978-1-61779-012-6_12

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-011-9

  • Online ISBN: 978-1-61779-012-6

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