Abstract
Standard polymerase chain reaction (PCR) protocols amplify relatively small fragments precluding the use of this approach when examining gross rearrangements of DNA. By using combinations of DNA polymerases, which feature either good polymerase activity or error-correction abilities, it is now possible to extend the length of DNA fragment that can be amplified. These “long-PCR” protocols have allowed the development of more rapid and convenient ways to analyse large-scale rearrangements of DNA and in many cases has superseded alternative approaches such as Southern blotting. The protocol described in this chapter illustrates some of the key points to be considered when developing a long PCR protocol.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., and Erlich H. A. (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239, 487–91.
Barnes W. M. (1994) PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc Natl Acad Sci USA 91, 2216–20.
Cheng S., Fockler C., Barnes W. M., and Higuchi R. (1994) Effective amplification of long targets from cloned inserts and human genomic DNA. Proc Natl Acad Sci USA 91, 5695–99.
Liu Q., Nozari G., and Sommer S. S. (1998) Single-tube polymerase chain reaction for rapid diagnosis of the inversion hotspot of mutation in hemophilia A. Blood 92, 1458–9. Erratum in Blood (1999) 93, 2141.
Liu Q. and Sommer S. S. (1998) Subcycling-PCR for multiplex long distance amplification of regions with high and low GC content: application to the inversion hotspot in the FVIII gene. Biotechniques 25, 1022–28.
Lakich D., Kazazian H. H. Jr, Antonarakis S. E., and Gitschier J. (1993) Inversions disrupting the factor VIII gene are a common cause of severe haemophilia A. Nat Genet 5, 236–41.
Primer 3 URL: http://primer3.sourceforge.net/webif.php.
Acknowledgments
The author would like to thank Anne Goodeve, Marian Hill, and David Stirling for their advice during the development of this specific protocol and Dörte Wren for technical assistance.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2011 Humana Press
About this protocol
Cite this protocol
Keeney, S. (2011). Long-PCR Amplification of Human Genomic DNA. In: Theophilus, B., Rapley, R. (eds) PCR Mutation Detection Protocols. Methods in Molecular Biology, vol 688. Humana Press. https://doi.org/10.1007/978-1-60761-947-5_6
Download citation
DOI: https://doi.org/10.1007/978-1-60761-947-5_6
Published:
Publisher Name: Humana Press
Print ISBN: 978-1-60761-946-8
Online ISBN: 978-1-60761-947-5
eBook Packages: Springer Protocols