Skip to main content

PTD–DRBD siRNA Delivery

  • Protocol
  • First Online:
Cell-Penetrating Peptides

Part of the book series: Methods in Molecular Biology ((MIMB,volume 683))

Abstract

A major hurdle in drug delivery today is for the drug to reach inside the cell to exert its biological effect. Many drug candidates are hydrophilic and are therefore not able to cross the hydrophobic plasma membrane, which serves to protect the cell from foreign molecules and pathogens. One promising drug candidate is the hydrophilic and negatively charged short-interfering RNA (siRNA), known to degrade target mRNA 1,000-fold more efficiently than small molecule drugs. The delivery capacity of small cationic peptides called protein transduction domains or cell-penetrating peptides, suggested them to be suitable delivery vehicles for siRNA. However, it has proven troublesome to utilize the PTD–siRNA conjugates for mRNA degradation due to the characteristics of siRNA, often resulting in precipitation and aggregation. This chapter describes a recently reported delivery strategy, PTD–DRBD fusion protein siRNA delivery, where a double-stranded RNA-binding domain expressed as a fusion protein together with three TAT PTDs binds the siRNA, thus masking the negatively charged backbone and preventing aggregation. This new protocol results in noncytotoxic mRNA degradation even more effective than lipofection.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Frankel, A. D. and Pabo, C. O. (1988) Cellular uptake of the tat protein from human immunodeficiency virus. Cell 55, 1189–1193.

    CAS  Google Scholar 

  2. Snyder, E. L. and Dowdy, S. F. (2004) Cell penetrating peptides in drug delivery. Pharm Res 21, 389–393.

    Article  CAS  PubMed  Google Scholar 

  3. Eguchi, A., Meade, B. R., Chang, Y. C., Fredrickson, C. T., Willert, K., Puri, N., and Dowdy, S. F. (2009) Efficient siRNA delivery into primary cells by a peptide transduction domain-dsRNA binding domain fusion protein. Nat Biotechnol 27, 567–571.

    Article  CAS  PubMed  Google Scholar 

  4. Vives, E., Brodin, P., and Lebleu, B. (1997) A truncated HIV-1 Tat protein basic domain rapidly translocates through the plasma membrane and accumulates in the cell nucleus. J Biol Chem 272, 16010–16017.

    Article  CAS  PubMed  Google Scholar 

  5. Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C. (1998) Potent and specific genetic interference by doublestranded RNA in Caenorhabditis elegans. Nature 391, 806–811.

    Article  CAS  PubMed  Google Scholar 

  6. St Johnston, D., Brown, N. H., Gall, J. G., and Jantsch, M. (1992) A conserved double-stranded RNA-binding domain. Proc Natl Acad Sci U S A 89, 10979–10983.

    Article  CAS  PubMed  Google Scholar 

  7. Bevilacqua, P. C. and Cech, T. R. (1996) Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR. Biochemistry 35, 9983–9984.

    Article  CAS  PubMed  Google Scholar 

  8. Wadia, J. S., Stan, R. V., and Dowdy, S. F. (2004) Transducible TAT-HA fusogenic peptide enhances escape of TAT-fusion proteins after lipid raft macropinocytosis. Nat Med 10, 310–315.

    Article  CAS  PubMed  Google Scholar 

  9. Miyoshi, H., Blömer, U., Takahashi, M., Gage, F. H., and Verma, I. M. (1998) Development of a self-inactivating lentivirus vector. J Virol 72, 8150–8157.

    CAS  PubMed  Google Scholar 

  10. Judge, A. D., Bola, G., Lee, A. C., and MacLachlan, I. (2006) Design of noninflammatory synthetic siRNA mediating potent gene silencing in vivo. Mol Ther 13, 494–505.

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

C.P.-A. was funded by a Knut & Alice Wallenberg’s Foundation Research Fellowship. A.E. was funded by a JSPS Research Fellowships for Young Scientists. This work was supported by the Leukemia and Lymphoma Society, the Pardee Foundation, California Institute of Regenerative Medicine, and Howard Hughes Medical Institute.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Palm-Apergi, C., Eguchi, A., Dowdy, S.F. (2011). PTD–DRBD siRNA Delivery. In: Langel, Ü. (eds) Cell-Penetrating Peptides. Methods in Molecular Biology, vol 683. Humana Press. https://doi.org/10.1007/978-1-60761-919-2_24

Download citation

  • DOI: https://doi.org/10.1007/978-1-60761-919-2_24

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-60761-918-5

  • Online ISBN: 978-1-60761-919-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics