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MicroRNA Activity in B Lymphocytes

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 667))

Abstract

Gene expression regulation by miRNAs has been reported to control key aspects of B cell differentiation and function (Chen et al., Science 303:83–86, 2004; Xiao et al., Cell 131:146–159, 2007; O’Carroll et al., Genes Dev. 21:1999–2004, 2007; Koralov et al. Cell 132:860–874, 2008; Rodriguez et al., Science 316:608–611, 2007; Costinean et al., Proc Natl Acad Sci USA 103:7024–7029, 2006; Thai et al., Science 316:604–608, 2007; Vigorito et al., Immunity 27:847–859, 2007; Dorsett et al., Immunity 28:630–638, 2008; Teng et al., Immunity 28:621–629, 2008; de Yebenes et al., J Exp Med 205:2199–2206, 2008; He et al., Nature 435:828–833, 2005; Ventura et al. Cell 132:875–886, 2008; Xiao et al., Nat Immunol 9:405–414, 2008). In this chapter, we describe the methodology used to perform a functional screening of a miRNA library to identify miRNAs relevant for mature B cell function in primary mouse B cells. These procedures include the construction of a miRNA library and the expression of individual miRNA clones in spleen B cells, as well as the description of functional assays used to determine the impact of miRNA expression on several aspects of B cell function, such as proliferation, apoptosis, and class switch recombination.

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References

  1. Xiao, C., and Rajewsky, K. (2009) MicroRNA control in the immune system: basic principles, Cell 136, 26–36.

    Article  PubMed  CAS  Google Scholar 

  2. Costinean, S., Zanesi, N., Pekarsky, Y., Tili, E., Volinia, S., Heerema, N., and Croce, C. M. (2006) Pre-B cell proliferation and lymphoblastic leukemia/high-grade lymphoma in E(mu)-miR155 transgenic mice, Proc. Natl. Acad. Sci. USA. 103, 7024–7029.

    Article  PubMed  CAS  Google Scholar 

  3. Thai, T. H., Calado, D. P., Casola, S., Ansel, K. M., Xiao, C., Xue, Y., Murphy, A., Frendewey, D., Valenzuela, D., Kutok, J. L., Schmidt-Supprian, M., Rajewsky, N., Yancopoulos, G., Rao, A., and Rajewsky, K. (2007) Regulation of the germinal center response by microRNA-155, Science 316, 604–608.

    Article  PubMed  CAS  Google Scholar 

  4. Xiao, C., Srinivasan, L., Calado, D. P., Patterson, H. C., Zhang, B., Wang, J., Henderson, J. M., Kutok, J. L., and Rajewsky, K. (2008) Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes, Nat. Immunol. 9, 405–414.

    Article  PubMed  CAS  Google Scholar 

  5. Chen, C. Z., Li, L., Lodish, H. F., and Bartel, D. P. (2004) MicroRNAs modulate hematopoietic lineage differentiation, Science 303, 83–86.

    Article  PubMed  CAS  Google Scholar 

  6. He, L., Thomson, J. M., Hemann, M. T., Hernando-Monge, E., Mu, D., Goodson, S., Powers, S., Cordon-Cardo, C., Lowe, S. W., Hannon, G. J., and Hammond, S. M. (2005) A microRNA polycistron as a potential human oncogene, Nature 435, 828–833.

    Article  PubMed  CAS  Google Scholar 

  7. Xiao, C., Calado, D. P., Galler, G., Thai, T. H., Patterson, H. C., Wang, J., Rajewsky, N., Bender, T. P., and Rajewsky, K. (2007) MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb, Cell 131, 146–159.

    Article  PubMed  CAS  Google Scholar 

  8. Rodriguez, A., Vigorito, E., Clare, S., Warren, M. V., Couttet, P., Soond, D. R., van Dongen, S., Grocock, R. J., Das, P. P., Miska, E. A., Vetrie, D., Okkenhaug, K., Enright, A. J., Dougan, G., Turner, M., and Bradley, A. (2007) Requirement of bic/microRNA-155 for normal immune function, Science 316, 608–611.

    Article  PubMed  CAS  Google Scholar 

  9. Ventura, A., Young, A. G., Winslow, M. M., Lintault, L., Meissner, A., Erkeland, S. J., Newman, J., Bronson, R. T., Crowley, D., Stone, J. R., Jaenisch, R., Sharp, P. A., and Jacks, T. (2008) Targeted deletion reveals essential and overlapping functions of the miR-17 through 92 family of miRNA clusters, Cell 132, 875–886.

    Article  PubMed  CAS  Google Scholar 

  10. Vigorito, E., Perks, K. L., Abreu-Goodger, C., Bunting, S., Xiang, Z., Kohlhaas, S., Das, P. P., Miska, E. A., Rodriguez, A., Bradley, A., Smith, K. G., Rada, C., Enright, A. J., Toellner, K. M., Maclennan, I. C., and Turner, M. (2007) MicroRNA-155 regulates the generation of immunoglobulin class-switched plasma cells, Immunity 27, 847–859.

    Article  PubMed  CAS  Google Scholar 

  11. Koralov, S. B., Muljo, S. A., Galler, G. R., Krek, A., Chakraborty, T., Kanellopoulou, C., Jensen, K., Cobb, B. S., Merkenschlager, M., Rajewsky, N., and Rajewsky, K. (2008) Dicer ablation affects antibody diversity and cell survival in the B lymphocyte lineage, Cell 132, 860–874.

    Article  PubMed  CAS  Google Scholar 

  12. O’Carroll, D., Mecklenbrauker, I., Das, P. P., Santana, A., Koenig, U., Enright, A. J., Miska, E. A., and Tarakhovsky, A. (2007) A slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway, Genes Dev. 21, 1999–2004.

    Article  PubMed  Google Scholar 

  13. Dorsett, Y., McBride, K. M., Jankovic, M., Gazumyan, A., Thai, T. H., Robbiani, D. F., Di Virgilio, M., San-Martin, B. R., Heidkamp, G., Schwickert, T. A., Eisenreich, T., Rajewsky, K., and Nussenzweig, M. C. (2008) MicroRNA-155 suppresses activation-induced cytidine deaminase-mediated Myc-Igh translocation, Immunity 28, 630–638.

    Article  PubMed  CAS  Google Scholar 

  14. Teng, G., Hakimpour, P., Landgraf, P., Rice, A., Tuschl, T., Casellas, R., and Papavasiliou, F. N. (2008) MicroRNA-155 is a negative regulator of activation-induced cytidine deaminase, Immunity 28, 621–629.

    Article  PubMed  CAS  Google Scholar 

  15. de Yebenes, V. G., Belver, L., Pisano, D. G., Gonzalez, S., Villasante, A., Croce, C., He, L., and Ramiro, A. R. (2008) miR-181b negatively regulates activation-induced cytidine deaminase in B cells, J. Exp. Med. 205, 2199–2206.

    Article  PubMed  Google Scholar 

  16. Inomata, M., Tagawa, H., Guo, Y. M., Kameoka, Y., Takahashi, N., and Sawada, K. (2009) MicroRNA-17-92 down-regulates expression of distinct targets in different B-cell lymphoma subtypes, Blood 113, 396–402.

    Article  PubMed  CAS  Google Scholar 

  17. Huppi, K., Volfovsky, N., Runfola, T., Jones, T. L., Mackiewicz, M., Martin, S. E., Mushinski, J. F., Stephens, R., and Caplen, N. J. (2008) The identification of microRNAs in a genomically unstable region of human chromosome 8q24, Mol. Cancer Res. 6, 212–221.

    Article  PubMed  CAS  Google Scholar 

  18. Nie, K., Gomez, M., Landgraf, P., Garcia, J. F., Liu, Y., Tan, L. H., Chadburn, A., Tuschl, T., Knowles, D. M., and Tam, W. (2008) MicroRNA-mediated down-regulation of PRDM1/Blimp-1 in Hodgkin/Reed-Sternberg cells: a potential pathogenetic lesion in Hodgkin lymphomas, Am. J. Pathol. 173, 242–252.

    Article  PubMed  CAS  Google Scholar 

  19. Kluiver, J., van den Berg, A., de Jong, D., Blokzijl, T., Harms, G., Bouwman, E., Jacobs, S., Poppema, S., and Kroesen, B. J. (2007) Regulation of pri-microRNA BIC transcription and processing in Burkitt lymphoma, Oncogene 26, 3769–3776.

    Article  PubMed  CAS  Google Scholar 

  20. Sampath, D., Calin, G. A., Puduvalli, V. K., Gopisetty, G., Taccioli, C., Liu, C. G., Ewald, B., Liu, C., Keating, M. J., and Plunkett, W. (2009) Specific activation of microRNA106b enables the p73 apoptotic response in chronic lymphocytic leukemia by targeting the ubiquitin ligase itch for degradation, Blood 113, 3744–3753.

    Article  PubMed  CAS  Google Scholar 

  21. He, L., and Hannon, G. J. (2004) MicroRNAs: small RNAs with a big role in gene regulation, Nat. Rev. Genet. 5, 522–531.

    Article  PubMed  CAS  Google Scholar 

  22. Chang, K., Elledge, S. J., and Hannon, G. J. (2006) Lessons from Nature: microRNA-based shRNA libraries, Nat. Methods 3, 707–714.

    Article  PubMed  CAS  Google Scholar 

  23. de Yebenes, V. G., and Ramiro, A. R. (2006) Activation-induced deaminase: light and dark sides, Trends. Mol. Med. 12, 432–439.

    Article  PubMed  Google Scholar 

  24. Stavnezer, J., Guikema, J. E., and Schrader, C. E. (2008) Mechanism and regulation of class switch recombination, Annu. Rev. Immunol. 26, 261–292.

    Article  PubMed  CAS  Google Scholar 

  25. Sernandez, I. V., de Yebenes, V. G., Dorsett, Y., and Ramiro, A. R. (2008) Haploinsufficiency of activation-induced deaminase for antibody diversification and chromosome translocations both in vitro and in vivo, PLoS One 3, e3927.

    Article  PubMed  Google Scholar 

  26. Reina-San-Martin, B., Difilippantonio, S., Hanitsch, L., Masilamani, R. F., Nussenzweig, A., and Nussenzweig, M. C. (2003) H2AX is required for recombination between immunoglobulin switch regions but not for intra-switch region recombination or somatic hypermutation, J. Exp. Med. 197, 1767–1778.

    Article  PubMed  CAS  Google Scholar 

  27. Nambu, Y., Sugai, M., Gonda, H., Lee, C. G., Katakai, T., Agata, Y., Yokota, Y., and Shimizu, A. (2003) Transcription-coupled events associating with immunoglobulin switch region chromatin, Science 302, 2137–2140.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

We would like to thank Dr He for kindly sharing a miRNA library with us and for helpful discussion. This work was supported by grants from the Ministerio de Educación y Ciencia (SAF2007-63130), the Comunidad Autónoma de Madrid (DIFHEMAT-CM), and the European Research Council (BCLYM-207844). V. G. de Yebenes and A. R. Ramiro are supported by the Ramón y Cajal program from the Ministerio de Educación y Ciencia.

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Correspondence to Almudena R. Ramiro .

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de Yébenes, V.G., Ramiro, A.R. (2010). MicroRNA Activity in B Lymphocytes. In: Monticelli, S. (eds) MicroRNAs and the Immune System. Methods in Molecular Biology, vol 667. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-60761-811-9_12

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  • DOI: https://doi.org/10.1007/978-1-60761-811-9_12

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-60761-810-2

  • Online ISBN: 978-1-60761-811-9

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