Skip to main content

Mutagen™: A Random Mutagenesis Method Providing a Complementary Diversity Generated by Human Error-Prone DNA Polymerases

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 634))

Abstract

Random mutagenesis is one of the most effective methodologies to generate variant libraries for directed protein evolution. Indeed, this approach requires no structural or mechanistic information and can uncover unexpected beneficial mutations. Here, we describe a new random mutagenesis method based on the use of human error-prone DNA polymerases (pol beta, pol eta and pol iota). This approach allows the random introduction of mutations through a single replication step followed by a selective PCR amplification of the replicated mutated sequences. The libraries generated using this methodology display different mutation rates and complementary mutational spectra. By taking advantage of the mutation bias of naturally highly error-prone DNA polymerases, MutaGen™ thus appears as a very useful tool for gene and protein randomization.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   159.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Rothwell PJ, Waksman G (2005) Structure and mechanism of DNA polymerases. Adv Protein Chem 71:401–440

    Article  PubMed  CAS  Google Scholar 

  2. Kunkel TA (2004) DNA replication fidelity. J Biol Chem 279:16895–16898

    Article  PubMed  CAS  Google Scholar 

  3. Matsumoto Y, Kim K (1995) Excision of deoxyribose phosphate residues by DNA polymerase beta during DNA repair. Science 269:699–702

    Article  PubMed  CAS  Google Scholar 

  4. Kunkel TA (1985) The mutational specificity of DNA polymerase-beta during in vitro DNA synthesis. Production of frameshift, base substitution, and deletion mutations. J Biol Chem 260:5787–5796

    PubMed  CAS  Google Scholar 

  5. Osheroff WP, Jung HK, Beard WA, Wilson SH, Kunkel TA (1999) The fidelity of DNA polymerase beta during distributive and processive DNA synthesis. J Biol Chem 274:3642–3650

    Article  PubMed  CAS  Google Scholar 

  6. Yang W (2005) Portraits of a Y-family DNA polymerase. FEBS Lett 579:868–872

    Article  PubMed  CAS  Google Scholar 

  7. Kunkel TA, Pavlov YI, Bebenek K (2003) Functions of human DNA polymerases eta, kappa and iota suggested by their properties, including fidelity with undamaged DNA templates. DNA Repair (Amst) 2:135–149

    Article  CAS  Google Scholar 

  8. Bouayadi K, Kharrat H, Louat T, Servant L, Cazaux C, Hoffmann JS (2002) Use of mutagenic polymerase for producing random mutations. Patent WO/2002/0238756

    Google Scholar 

  9. Mondon P, Bouayadi K, Kharrat H (2007) Highly diversified antibody libraries. Patent WO/2007/137616

    Google Scholar 

  10. Mondon P, Souyris N, Douchy L, Crozet F, Bouayadi K, Kharrat H (2007) Method for generation of human hyperdiversified antibody fragment library. Biotechnol J 2:76–82

    Article  PubMed  CAS  Google Scholar 

  11. Emond S, Mondon P, Pizzut-Serin S, Douchy L, Crozet F, Bouayadi K, Kharrat H, Potocki-Veronese G, Monsan P, Remaud-Simeon M (2008) A novel random mutagenesis approach using human mutagenic DNA polymerases to generate enzyme variant libraries. Protein Eng Des Sel 21:267–274

    Article  PubMed  CAS  Google Scholar 

  12. Emond S, Andre I, Jaziri K, Potocki-Veronese G, Mondon P, Bouayadi K, Kharrat H, Monsan P, Remaud-Simeon M (2008) Combi­natorial engineering to enhance thermostability of amylosucrase. Protein Sci 17:967–976

    Article  PubMed  CAS  Google Scholar 

  13. Emond S, Potocki-Veronese G, Mondon P, Bouayadi K, Kharrat H, Monsan P, Remaud-Simeon M (2007) Optimized and automated protocols for high-throughput screening of amylosucrase libraries. J Biomol Screen 12:715–723

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Philippe Mondon .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer Science+Buesiness Media, LLC

About this protocol

Cite this protocol

Mondon, P., Grand, D., Souyris, N., Emond, S., Bouayadi, K., Kharrat, H. (2010). Mutagen™: A Random Mutagenesis Method Providing a Complementary Diversity Generated by Human Error-Prone DNA Polymerases. In: Braman, J. (eds) In Vitro Mutagenesis Protocols. Methods in Molecular Biology, vol 634. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-60761-652-8_26

Download citation

  • DOI: https://doi.org/10.1007/978-1-60761-652-8_26

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-60761-651-1

  • Online ISBN: 978-1-60761-652-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics