Abstract
N- Glycosylation of proteins is recognized as one of the most common post-translational modifications. Until recently it was believed that N-glycosylation occurred exclusively in eukaryotes until the discovery of the general protein glycosylation pathway (Pgl) in Campylobacter jejuni. We have developed a new glycomics strategy based on lectin-affinity capture of lipid-linked oligosaccharides (LLOs) coupled to capillary electrophoresis mass spectrometry. The LLO intermediates of the C. jejuni Pgl pathway were used to validate the methodology and to better characterize the bacterial model system for protein N-glycosylation. This method provides a rapid, non-radioactive approach for the characterization of intermediates in polysaccharide biosynthesis and is a useful tool for glycoengineering efforts in bacteria.
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Abu-Qarn, M., Eichler, J., and Sharon, N. (2008) Not just for Eukarya anymore: protein glycosylation in Bacteria and Archaea. Curr. Opin. Struct. Biol. 18, 544–550.
Eichler, J. and Adams, M. W. W. (2005) Posttranslational Protein Modification in Archaea. Microbiol. Mol. Biol. Rev. 69, 393–425.
Messner, P. (2004) Prokaryotic glycoproteins: unexplored but important. J. Bacteriol. 186, 2517–2519.
Weerapana, E. and Imperiali, B. (2006) Asparagine-linked protein glycosylation: from eukaryotic to prokaryotic systems. Glycobiology 16, 91R–R101.
Szymanski, C. M. and Wren, B. W. (2005) Protein glycosylation in bacterial mucosal pathogens. Nat. Rev. Microbiol. 3, 225–237.
Szymanski, C. M., Yao, R., Ewing, C. P., Trust, T. J., and Guerry, P. (1999) Evidence for a system of general protein glycosylation in Campylobacter jejuni. Mol. Microbiol. 32, 1022–1030.
Banerjee, A. and Ghosh, S. K. (2003) The role of pilin glycan in neisserial pathogenesis. Mol. Cell Biochem. 253, 179–190.
Schirm, M., Soo, E. C., Aubry, A. J., Austin, J., Thibault, P., and Logan, S. M. (2003) Structural, genetic and functional characterization of the flagellin glycosylation process in Helicobacter pylori. Mol. Microbiol. 48, 1579–1592.
Castric, P., Cassels, F. J., and Carlson, R. W. (2001) Structural characterization of the Pseudomonas aeruginosa 1244 pilin glycan. J. Biol. Chem. 276, 26479–26485.
Spiro, R. G. (2002) Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds. Glycobiology 12, 43R–R456.
Power, P. M., Seib, K. L., and Jennings, M. P. (2006) Pilin glycosylation in Neisseria meningitidis occurs by a similar pathway to wzy-dependent O-antigen biosynthesis in Escherichia coli. Biochem. Biophys. Res. Commun. 347, 904–908.
Chaban, B., Voisin, S., Kelly, J., Logan, S. M., and Jarrell, K. F. (2006) Identification of genes involved in the biosynthesis and attachment of Methanococcus voltae N-linked glycans: insight into N-linked glycosylation pathways in Archaea. Mol. Microbiol. 61, 259–268.
Faridmoayer, A., Fentabil, M. A., Mills, D. C., Klassen, J. S., and Feldman, M. F. (2007) Functional characterization of bacterial oligosaccharyltransferases involved in O-linked protein glycosylation. J. Bacteriol. 189, 8088–8098.
Young, N. M., Brisson, J.-R., Kelly, J., Watson, D. C., Tessier, L., Lanthier, P. H., Jarrell, H. C., Cadotte, N., St Michael, F., Aberg, E., and Szymanski, C. M. (2002) Structure of the N-linked glycan present on multiple glycoproteins in the Gram-negative bacterium, Campylobacter jejuni. J. Biol. Chem. 277, 42530–42539.
Kowarik, M., Young, N. M., Numao, S., Schulz, B. L., Hug, I., Callewaert, N., Mills, D. C., Watson, D. C., Hernandez, M., Kelly, J. F., Wacker, M., and Aebi, M. (2006) Definition of the bacterial N-glycosylation site consensus sequence. EMBO J. 25, 1957–1966.
Spiro, R. G., Spiro, M. J., and Bhoyroo, V. D. (1976) Lipid-saccharide intermediates in glycoprotein biosynthesis. II. Studies on the structure of an oligosaccharide-lipid from thyroid. J. Biol. Chem. 251, 6409–6419.
Kelleher, D. J., Karaoglu, D., and Gilmore, R. (2001) Large-scale isolation of dolichol-linked oligosaccharides with homogeneous oligosaccharide structures: determination of steady-state dolichol-linked oligosaccharide compositions. Glycobiology 11, 321–333.
Gao, N. and Lehrman, M. A. (2002) Analyses of dolichol pyrophosphate-linked oligosaccharides in cell cultures and tissues by fluorophore-assisted carbohydrate electrophoresis. Glycobiology 12, 353–360.
Moini, M. (2002) Capillary electrophoresis mass spectrometry and its application to the analysis of biological mixtures. Anal. Bioanal. Chem. 373, 466–480.
Li, J., Wang, Z., and Altman, E. (2005) In-source fragmentation and analysis of polysaccharides by capillary electrophoresis–mass spectrometry. Rapid Commun. Mass Spectrom. 19, 1305–1314.
Li, J. and Richards, J. C. (2007) Application of capillary electrophoresis mass spectrometry to the characterization of bacterial lipopolysaccharides. Mass Spectrom. Rev. 26, 35–50.
Li, Y. L., Su, X., Stahl, P. D., and Gross, M. L. (2007) Quantification of diacylglycerol molecular species in biological samples by electrospray ionization mass spectrometry after one-step derivatization. Anal. Chem. 79, 1569–1574.
Curatolo, W., Yau, A. O., Small, D. M., and Sears, B. (1978) Lectin-induced agglutination of phospholipid/glycolipid vesicles. Biochemistry 17, 5740–5744.
Smith, D. F. (1983) Glycolipid-lectin interactions: detection by direct binding of 125I-lectins to thin layer chromatograms. Biochem. Biophys. Res. Commun. 115, 360–367.
Smith, D. F. and Torres, B. V. (1989) Lectin affinity chromatography of glycolipids and glycolipid-derived oligosaccharides. Methods Enzymol. 179, 30–45.
Torres, B. V., McCrumb, D. K., and Smith, D. F. (1988) Glycolipid-lectin interactions: reactivity of lectins from Helix pomatia, Wisteria floribunda, and Dolichos biflorus with glycolipids containing N-acetylgalactosamine. Arch. Biochem. Biophys. 262, 1–11.
Linton, D., Allan, E., Karlyshev, A. V., Cronshaw, A. D., and Wren, B. W. (2002) Identification of N-acetylgalactosamine-containing glycoproteins PEB3 and CgpA in Campylobacter jejuni. Mol. Microbiol. 43, 497–508.
Kelly, J., Jarrell, H., Millar, L., Tessier, L., Fiori, L. M., Lau, P. C., Allan, B., and Szymanski, C. M. (2006) Biosynthesis of the N-linked glycan in Campylobacter jejuni and addition onto protein through block transfer. J. Bacteriol. 188, 2427–2434.
Parkhill, J., Wren, B. W., Mungall, K., Ketley, J. M., Churcher, C., Basham, D., Chillingworth, T., Davies, R. M., Feltwell, T., Holroyd, S., Jagels, K., Karlyshev, A. V., Moule, S., Pallen, M. J., Penn, C. W., Quail, M. A., Rajandream, M. A., Rutherford, K. M., van Vliet, A. H., Whitehead, S., and Barrell, B. G. (2000) The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. Nature 403, 665–668.
Chen, M. M., Weerapana, E., Ciepichal, E., Stupak, J., Reid, C. W., Swiezewska, E., and Imperiali, B. (2007) Polyisoprenol Specificity in the Campylobacter jejuni N-Linked Glycosylation Pathway. Biochemistry 46, 14342–14348.
Glover, K. J., Weerapana, E., and Imperiali, B. (2005) In vitro assembly of the undecaprenylpyrophosphate-linked heptasaccharide for prokaryotic N-linked glycosylation. Proc. Natl. Acad. Sci. U. S. A. 102, 14255–14259.
Reid, C. W., Stupak, J., Chen, M. M., Imperiali, B., Li, J., and Szymanski, C. M. (2008) Affinity-capture tandem mass spectrometric characterization of polyprenyl-linked oligosaccharides: tool to study protein N-glycosylation pathways. Anal. Chem. 80, 5468–5475.
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Reid, C.W., Stupak, J., Szymanski, C.M. (2010). Characterization of Lipid-Linked Oligosaccharides by Mass Spectrometry. In: Li, J. (eds) Functional Glycomics. Methods in Molecular Biology, vol 600. Humana Press. https://doi.org/10.1007/978-1-60761-454-8_13
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DOI: https://doi.org/10.1007/978-1-60761-454-8_13
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