Summary
Quantitative analysis of components from different subcellular fractions is a key to the understanding of metabolic function as well as to the origin, the biogenesis, and the crosstalk of organelles. The yeast is an excellent model organism to address such questions from the biochemical, molecular biological, and cell biological viewpoints. A yeast organelle which gained much interest during the last decade is the lipid particle/droplet (LP), a storage compartment for nonpolar lipids but at the same time an organelle actively contributing to cellular metabolism. In this chapter, we describe methods and techniques that are commonly used to analyze lipids from LP at the molecular level by thin-layer chromatography, gas–liquid chromatography, and mass spectrometry. We provide an easy to follow guideline for the isolation of these organelles, the qualitative and quantitative analysis of lipid components and show results obtained with these methods.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Abbreviations
- CWW:
-
Cell wet weight
- ER:
-
Endoplasmic reticulum
- GLC:
-
Gas–liquid chromatography
- LP:
-
Lipid particle(s)/droplet(s)
- MS:
-
Mass spectrometry
- PC:
-
Phosphatidylcholine
- PE:
-
Phosphatidylethanolamine
- PI:
-
Phosphatidylinositol
- PS:
-
Phosphatidylserine
- RT:
-
Room temperature
- STE:
-
Steryl ester
- TAG:
-
Triacylglycerol
- TLC:
-
Thin-layer chromatography
References
Athenstaedt, K. and Daum, G. (2005) Tgl4p and Tgl5p, two triacylglycerol lipases of the yeast Saccharomyces cerevisiae are localized to lipid particles. J. Biol. Chem., 280, 37301–37309.
Athenstaedt, K., Zweytick, D., Jandrositz, A., Kohlwein, S. D., and Daum, G. (1999) Identification and characterization of major lipid particle proteins of the yeast Saccharomyces cerevisiae. J. Bacteriol., 181, 6441–6448.
Zweytick, D., Athenstaedt, K., and Daum, G. (2000) Intracellular lipid particles of eukaryotic cells. Biochim. Biophys. Acta, 1469, 101–120.
Scow, R. O., Blanchette-Mackie, E. J., and Smith, L. C. (1980) Transport of lipid across capillary endothelium. Fed. Proc., 39, 2610–2617.
Blanchette-Mackie, E. J., Dwyer, N. K., Barber, T., Coxey, R. A., Takeda, T., Rondinone, C. M., Theodorakis, J. L., Greenberg, A. S., and Londos, C. (1995) Perilipin is located on the surface layer of intracellular lipid droplets in adipocytes. J. Lipid Res., 36, 1211–1226.
Robenek, H., Hofnagel, O., Buers, I., Robenek, M. J., Troyer, D., and Severs, N. J. (2006) Adipophilin-enriched domains in the ER membrane are sites of lipid droplet biogenesis. J. Cell Sci., 119 , 4215–4224.
Czabany, T., Athenstaedt, K., and Daum, G. (2007) Synthesis, storage and degradation of neutral lipids in yeast. Biochim. Biophys. Acta, 1771 , 299–309.
Sandager, L., Gustavsson, M. H., Stahl, U., Dahlqvist, A., Wiberg, E., Banas, A., Lenman, M., Ronne, H., and Stymne, S. (2002) Storage Lipid Synthesis Is Non-essential in Yeast. J. Biol. Chem., 277, 6478–6482.
Rajakumari, S., Grillitsch, K., and Daum, G. (2008) Synthesis and turnover of non-polar lipids in yeast. Prog. Lipid Res., 47, 157–171.
Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680– 685.
Lowry, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951) Protein measurement with the Folin phenol reagent. J. Biol. Chem., 193, 265–275.
Haid, A. and Suissa, M. (1983) Immunochemical identification of membrane proteins after sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Methods Enzymol., 96, 192–205.
Folch, J., Lees, M., and Stanley, G. H. S. (1957) A simple method for the isolation and purification of total lipides from animal tissues. J. Biol. Chem., 226, 497–509.
Morrison, W. R. and Smith, L. M. (1964) Preparation of fatty acid methyl esters and dimethylacetals from lipids with boron fluoride–methanol. J. Lipid Res., 5, 600–608.
Quail, M. A. and Kelly, S. L. (1996) The extraction and analysis of sterols from yeast. Methods Mol. Biol., 53, 123–131.
Leber, R., Zinser, E., Zellnig, G., Paltauf, F., and Daum, G. (1994) Characterization of lipid particles of the yeast, Saccharomyces cerevisiae. Yeast, 10, 1421–1428.
Czabany, T., Wagner, A., Zweytick, D., Lohner, K., Leitner, E., Ingolic, E., and Daum, G. (2008) Structural and biochemical properties of lipid particles from the yeast Saccharomyces cerevisiae. J. Biol. Chem., 283, 17065–17074.
Acknowledgments
Work on yeast nonpolar lipid metabolism in our laboratory was recently supported by the Fonds zur Förderung der wissenschaftlichen Forschung in Österreich (projects 15141, 18857 and W901-B05 to G.D.).
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2009 Humana Press, a part of Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Connerth, M., Grillitsch, K., Köfeler, H., Daum, G. (2009). Analysis of Lipid Particles from Yeast. In: Armstrong, D. (eds) Lipidomics. Methods in Molecular Biology, vol 579. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-60761-322-0_18
Download citation
DOI: https://doi.org/10.1007/978-1-60761-322-0_18
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-60761-321-3
Online ISBN: 978-1-60761-322-0
eBook Packages: Springer Protocols