Skip to main content

Preparation of Peptides for Microsequencing from Proteins in Polyacrylamide Gels

  • Protocol
The Protein Protocols Handbook

Part of the book series: Springer Protocols Handbooks ((SPH))

Abstract

Polyacrylamide gel electrophoresis (PAGE) is undoubtedly one of the most effective methods for the separation of proteins and is used extensively in the course of protein purification. Usually the separation is carried out in one dimension only and separates according to the size of the protein, i.e., sodium dodecyl sulfate-PAGE (SDS-PAGE) (1). However, to enhance further the separation of complex mixtures, such as whole-cell lysates, two-dimensional PAGE (2D PAGE) will provide an extremely powerful separation of proteins (2).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680–685.

    Article  PubMed  CAS  Google Scholar 

  2. O’Farrell, P. H. (1975) High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250, 4007–4021.

    PubMed  Google Scholar 

  3. Celis, J. E., Gesser, B., Rasmussen, H. H., Madsen, P., Leffers, H., Dejgaard, K., Honore, B., Olsen, E., Ratz, G., et al. (1990) Comprehensive two-dimensional gel protein databases offer a global approach to the analysis of human cells: the transformed amnion cells (AMA) master database and its link to genome DNA sequence analysis. Electrophoresis 11, 989–1071.

    Article  PubMed  CAS  Google Scholar 

  4. Garrels, J. and Franza, B. (1989) The REF52 protein database: methods of database construction and analysis using the QUEST system and characterization of protein patterns from proliferating and quiescent REF52 cells. J. Biol. Chem. 264, 5283–5298.

    PubMed  CAS  Google Scholar 

  5. Ward, D. L. and Simpson, R. J. (1991) Micropreparative protein isolation from polyacrylamide gels following detection by high-resolution dynamic imaging: application to microsequencing. Pept. Res. 4, 187–193.

    PubMed  CAS  Google Scholar 

  6. Ward, D. L., Reid, G. E., Moritz, R. L., and Simpson, R. J. (1990) Strategies for internal amino acid sequence analysis of proteins separated by polyacrylamide gel electrophoresis. J. Chromatogr. 519, 199–216.

    Article  PubMed  CAS  Google Scholar 

  7. Towbin, H., Staehelin, T., and Gordon, J. (1979) Electrophoretic transfer of proteins from acrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. USA 76, 4350–4354.

    Article  PubMed  CAS  Google Scholar 

  8. Aebersold, R. H., Leavitt, J., Saavedra, R. A., Hood, L. E., and Kent, S. B. (1987) Internal amino acid sequence analysis of proteins separated by one-or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose. Proc. Natl. Acad. Sci USA 84, 6970–6974.

    Article  PubMed  CAS  Google Scholar 

  9. Matsudaira, P. (1987) Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes. J. Biol. Chem. 262, 10,035–10,038.

    PubMed  CAS  Google Scholar 

  10. Patterson, S. D. (1994) From electrophoretically separated protein to identification: strategies for sequence and mass analysis. Anal. Biochem. 221, 1–15.

    Article  PubMed  CAS  Google Scholar 

  11. Kawasaki, H., Emori, Y., and Suzuki, K. (1990) Production and separation of peptides from proteins stained with Coomassie brilliant blue R-250 after separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Anal. Biochem. 191, 332–336.

    Article  PubMed  CAS  Google Scholar 

  12. Eckerskorn, C. and Lottspiech, F. (1989) Internal amino acid sequence analysis of proteins separated by gel electrophoresis after tryptic digestion in polyacrylamide matrix. Chromatographia 28, 92–94.

    Article  CAS  Google Scholar 

  13. Rosenfeld, J., Capdevielle, J., Guillemot, J. C., and Ferrara, P. (1992) In-gel digestion of proteins for internal sequence analysis after one-or two-dimensional gel electrophoresis. Anal. Biochem. 203, 173–179.

    Article  PubMed  CAS  Google Scholar 

  14. Pappin, D. J. C., Hojrup, P., and Bleasby, A. J. (1993) Rapid identification of proteins by peptide-mass fingerprinting. Curr. Biol. 6, 327–332.

    Article  Google Scholar 

  15. Henzel, W. J., Billeci, T. M., Stults, J. T., Wong, S., Grimley, C., and Watanabe, C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc. Natl. Acad. Sci. USA 90, 5011–5015.

    Article  PubMed  CAS  Google Scholar 

  16. Elicone, C., Lui, M., Geromanos, S., Erdjument-Bromage, H., and Tempst, P. (1994) Microbore reversed-phase high-performance liquid chromatographic purification of peptides for combined chemical sequencing—laser description mass spectrometric analysis. J. Chromatogr. A. 676, 121–137.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1996 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Philp, R.J. (1996). Preparation of Peptides for Microsequencing from Proteins in Polyacrylamide Gels. In: Walker, J.M. (eds) The Protein Protocols Handbook. Springer Protocols Handbooks. Humana Press. https://doi.org/10.1007/978-1-60327-259-9_68

Download citation

  • DOI: https://doi.org/10.1007/978-1-60327-259-9_68

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-338-2

  • Online ISBN: 978-1-60327-259-9

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics