Abstract
This chapter describes the methods and specific procedures used to fabricate microstructures by soft lithography. These techniques are useful for the prototyping of devices useful for applications in biotechnology. Fabrication by soft lithography does not require specialized or expensive equipment; the materials and facilities necessary are found commonly in biological and chemical laboratories in both academia and industry. The combination of the fact that the materials are low-cost and that the time from design to prototype device can be short (< 24 h) makes it possible to use and to screen rapidly devices that also can be disposable. Here we describe the procedures for fabricating microstructures with lateral dimensions as small as 1 μm. These types of microstructures are useful for microfluidic devices, cell-based assays, and bioengineered surfaces.
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Whitesides, G. M., Ostuni, E. S., Takayama, S., Jiang, X., and Ingber, D. E. (2001) Soft Lithography in Biology and Biochemistry. Annu. Rev. Biomed. Eng. 3, 335–373.
Henkel, G. W. (2002) Live cell assays: tools for functional genomics. Funct. Genomics Ser. 1, 279–311.
Bhadriraju, K., and Chen, C. S. (2002) Engineering cellular microenvironments to improve cell-based drug testing. Drug Discov. Today 7, 612–620.
Sundberg, S. A. (2000) High-throughput and ultra-high-throughput screening: solution- and cell-based approaches. Curr. Opin. Biotechnol. 11, 47–53.
Mere, L., Bennett, T., Coassin, P., England, P., Hamman, B., Rink, T., Zimmerman, S., and Negulescu, P. (1999) Miniaturized FRET assays and microfluidics: key components for ultra-high-throughput screening. Drug Discov. Today 4, 363–369.
Paegel Brian, M., Blazej Robert, G., and Mathies Richard, A. (2003) Microfluidic devices for DNA sequencing: sample preparation and electrophoretic analysis. Curr. Opin. Biotechnol. 14, 42–50.
Righetti, P. G., Gelfi, C., and D’Acunto, M. R. (2002) Recent progress in DNA analysis by capillary electrophoresis. Electrophoresis 23, 1361–1374.
Foquet, M., Korlach, J., Zipfel, W., Webb, W. W., and Craighead, H. G. (2002) DNA fragment sizing by single molecule detection in submicrometer-sized closed fluidic channels. Anal. Chem. 74, 1415–1422.
Cabodi, M., Turner, S. W. P., and Craighead, H. G. (2002) Entropic Recoil Separation of Long DNA Molecules. Anal. Chem. 74, 5169–5174.
Fodor, S. P. A. (1997) DNA sequencing: Massively parallel genomics. Science 277, 393, 395.
Kennedy, G. C., Matsuzaki, H., Dong, S., Liu, W.-M., Huang, J., Liu, G., Su, X., Cao, M., Chen, W., Zhang, J., Liu, W., Yang, G., Di, X., Ryder, T., He, Z., Surti, U., Phillips, M. S., Boyce-Jacino, M. T., Fodor, S. P. A., and Jones, K. W. (2003) Large-scale genotyping of complex DNA. Nature Biotechnol. 21, 1233–1237.
Lipshutz, R. J., Fodor, S. P. A., Gingeras, T. R., and Lockhart, D. J. (1999) High density synthetic oligonucleotide arrays. Nature Genet. 21, 20–24.
Sia, S. K., Linder, V., Parviz, B. A., Siegel, A., and Whitesides, G. M. (2004) An integrated approach to a portible and low-cost immunoassy for resource-poor settings. Angew. Chem. Int. Ed. 43, 498–502.
Linder, V., Verpoorte, E., De Rooij, N. F., Sigrist, H., and Thormann, W. (2002) Application of surface biopassivated disposable poly(dimethylsiloxane)/glass chips to a heterogeneous competitive human serum immunoglobulin G immunoassay with incorporated internal standard. Electrophoresis 23, 740–749.
Rossier, J. S., and Girault, H. H. (2001) Enzyme linked immunosorbent assay on a microchip with electrochemical detection. Lab on a Chip 1, 153–157.
Lai, S., Wang, S., Luo, J., Lee, L. J., Yang, S.-T., and Madou, M. J. (2004) Design of a compact disk-like microfluidic platform for enzyme-linked immunosorbent assay. Anal. Chem. 76, 1832–1837.
Song, J. M., Griffin, G. D., and Vo-Dinh, T. (2003) Application of an integrated microchip system with capillary array electrophoresis to optimization of enzymatic reactions. Anal. Chim. Acta 487, 75–82.
Stenger, D. A., Andreadis, J. D., Vora, G. J., and Pancrazio, J. J. (2002) Potential applications of DNA microarrays in biodefense-related diagnostics. Curr. Opin. Biotechnol. 13, 208–212.
Sadik, O. A., Land, W. H., Jr., and Wang, J. (2003) Targeting chemical and biological warfare agents at the molecular level. Electroanalysis 15, 1149–1159.
Reynolds, J. G., and Hart, B. R. (2004) Nanomaterials and their application to defense and homeland security. JOM 56, 36–39.
Needham, S. R. (2003) Bioanalytical method validation: example, HPLC/MS/MS bioanalysis of an anti-nerve gas agent drug for homeland security. Am. Pharm. Rev. 6, 86, 88, 90–91.
Yadav, P., and Blaine, L. (2004) Microbiological threats to homeland security. IEEE Eng. Med. Bio. Mag. 23, 136–141.
Kun, L. (2004) Technology and policy review for homeland security. IEEE Eng. Med. Bio. Mag. 23, 30–44.
Gluodenis, T., and Harrison, S. (2004) Homeland security and bioterrorism applications: detection of bioweapon pathogens by microfluidic-based electrophoretic DNA analysis. Med. Lab. Observ. 36, 34–38.
Xia, Y., and Whitesides, G. M. (1998) Soft Lithography. Angew. Chem. Int. Ed. 37, 550–575.
Xia, Y., and Whitesides, G. M. (1998) Soft Lithography. Ann. Rev. Mater. Sci. 28, 153–184.
Sia, S. K., and Whitesides, G. M. (2003) Microfluidic devices fabricated in poly(dimethylsiloxane) for biological studies. Electrophoresis 24, 3563–3576.
Whitesides, G. M., and Stroock, A. D. (2001) Flexible methods for microfluidics. Phys. Today 54, 42–48.
Schmid, H., and Michel, B. (2000) Siloxane polymers for high-resolution, high-accuracy soft lithography. Macromolecules 33, 3042–3049.
Jiang, X., and Whitesides, G. M. (2003) Engineering microtools in polymers to study cell biology. Eng. Life Sci. 3, 475–480.
Folch, A., and Toner, M. (2000) Microengineering of cellular interactions. Annu. Rev. Biomed. Eng 2, 227–256.
Linder, V., Wu, H., Jiang, X., and Whitesides, G. M. (2003) Rapid prototyping of 2D structures with feature sizes larger than 8 μm. Anal. Chem. 75, 2522–2527.
Qin, D., Xia, Y., and Whitesides, G. M. (1996) Rapid prototyping of complex structures with feature sizes larger than 20 µm. Adv. Mater. 8, 917–919.
Love, J. C., Wolfe, D. B., Jacobs, H. O., and Whitesides, G. M. (2001) Microscope projection photolithography for rapid prototyping of masters with micron-scale features for use in soft lithography. Langmuir 17, 6005–6012.
Wu, H., Odom, T. W., and Whitesides, G. M. (2002) Connectivity of features in microlens array reduction photolithography: Generation of different patterns using a single photomask. J. Am. Chem. Soc. 124, 7288–7289.
Wu, H., Odom, T. W., and Whitesides, G. M. (2002) Reduction photolithography using microlens arrays: Applications in grayscale photolithography. Anal. Chem. 74, 3267–3273.
Wu, H., Odom, T. W., and Whitesides, G. M. (2002) Generation of chrome masks with micrometer-scale features using microlens lithography. Adv. Mater. 14, 1213–1216.
Wu, M. H., and Whitesides, G. M. (2001) Fabrication of arrays of two-dimensional micropatterns using microspheres as microlenses for projection lithography. Appl. Phys. Lett. 78, 2273–2275.
Wu, M.-H., Paul, K. E., Yang, J., and Whitesides, G. M. (2002) Fabrication of frequency-selective surfaces using microlens photolithography. Appl. Phys. Lett. 80, 3500–3502.
Ostuni, E., Kane, R., Chen, C. S., Ingber, D. E., and Whitesides, G. M. (2000) Patterning mammalian cells using elastomeric membranes. Langmuir 16, 7811–7819.
Folch, A., Jo, B.-H., Beebe, D., and Toner, M. (2000) Microfabricated elastomeric stensils for micropatterning cell cultures. J. Biomed. Mater. Res. 52, 346–353.
Hatch, A., Kamholz, A. E., Hawkins, K. R., Munson, M. S., Schilling, E. A., Weigl, B. H., and Yager, P. (2001) A rapid diffusion immunoassay in a T-sensor. Nature Biotechnol. 19, 461–465.
Chiem, N. H., and Harrison, D. J. (1998) Microchip systems for immunoassay: an integrated immunoreactor with electrophoretic separation for serum theophylline determination. Clin. Chem. 44, 591–598.
Ismagilov, R. F., Ng, J. M. K., Kenis, P. J. A., and Whitesides, G. M. (2001) Microfluidic arrays of fluid-fluid diffusional contacts as detection elements and combinatorial tools. Anal. Chem. 73, 5207–5213.
Bernard, A., Michel, B., and Delamarche, E. (2001) Micromosaic immunoassays. Anal. Chem. 73, 8–12.
Jiang, X., Ng, J. M. K., Stroock, A. D., Dertinger, S. K. W., and Whitesides, G. M. (2003) A miniaturized, parallel, serially diluted immunoassay for analyzing multiple antigens. J. Am. Chem. Soc. 125, 5294–5295.
Harris, C. M. (2003) Shrinking the LC landscape. Anal. Chem. 75, 64A–69A.
Slentz, B. E., Penner, N. A., Lugowska, E., and Regnier, F. (2001) Nanoliter capillary electrochromatography columns based on collocated monolithic support structures molded in poly(dimethyl siloxane). Electrophoresis 22, 3736–3743.
Jiang, Y., Wang, P.-C., Locascio, L. E., and Lee, C. S. (2001) Integrated plastic microfluidic devices with ESI-MS for drug screening and residue analysis. Anal. Chem. 73, 2048–2053.
Kim, J. S., and Knapp, D. R. (2001) Microfabrication of polydimethylsiloxane electrospray ionization emitters. J. Chromatogr. A 924, 137–145.
Huikko, K., Oestman, P., Grigoras, K., Tuomikoski, S., Tiainen, V. M., Soininen, A., Puolanne, K., Manz, A., Franssila, S., Kostiainen, R., and Kotiaho, T. (2003) Poly(dimethylsiloxane) electrospray devices fabricated with diamond-like carbon-poly(dimethylsiloxane) coated SU-8 masters. Lab on a Chip 3, 67–72.
Fu, A. Y., Chou, H.-P., Spence, C., Arnold, F. H., and Quake, S. R. (2002) An integrated microfabricated cell sorter. Anal. Chem. 74, 2451–2457.
Deng, T., Prentiss, M., and Whitesides, G. M. (2002) Fabrication of magnetic microfiltration systems using soft lithography. Appl. Phys. Lett. 80, 461–463.
Cho, B. S., Schuster, T. G., Zhu, X., Chang, D., Smith, G. D., and Takayama, S. (2003) Passively driven integrated microfluidic system for separation of motile sperm. Anal. Chem. 75, 1671–1675.
Beebe, D., Wheeler, M., Zeringue, H., Walters, E., and Raty, S. (2002) Microfluidic technology for assisted reproduction. Theriogenology 57, 125–135.
Takayama, S., McDonald, J. C., Ostuni, E., Liang, M. N., Kenis, P. J. A., Ismagilov, R. F., and Whitesides, G. M. (1999) Patterning cells and their environments using multiple laminar fluid flows in capillary networks. Proc. Natl. Acad. Sci. U.S.A. 96, 5545–5548.
Chiu, D. T., Li Jeon, N., Huang, S., Kane, R. S., Wargo, C. J., Choi, I. S., Ingber, D. E., and Whitesides, G. M. (2000) Patterned deposition of cells and proteins onto surfaces by using three-dimensional microfluidic systems. Proc. Natl. Acad. Sci. U.S.A. 97, 2408–2413.
Takayama, S., Ostuni, E., LeDuc, P., Naruse, K., Ingber, D. E., and Whitesides, G. M. (2001) Subcellular positioning of small molecules. Nature 411, 1016.
Sawano, A., Takayama, S., Matsuda, M., and Miyawaki, A. (2002) Lateral propagation of EGF signaling after local stimulation is dependent on receptor density. Dev. Cell 3, 245–257.
McDonald, J. C., Duffy, D. C., Anderson, J. R., Chiu, D. T., Wu, H., and Whitesides, G. M. (2000) Fabrication of microfluidic systems in poly(dimethylsiloxane). Electrophoresis 21, 27–40.
Kane, R. S., Deschatelets, P., and Whitesides, G. M. (2003) Kosmotropes form the basis of protein-resistant surfaces. Langmuir 19, 2388–2391.
Herrwerth, S., Rosendahl, T., Feng, C., Fick, J., Eck, W., Himmelhaus, M., Dahint, R., and Grunze, M. (2003) Covalent coupling of antibodies to self-assembled monolayers of carboxy-functionalized poly(ethylene glycol): Protein resistance and specific binding of biomolecules. Langmuir 19, 1880–1887.
Veiseh, M., Zareie, M. H., and Zhang, M. (2002) Highly selective protein patterning on gold-silicon substrates for biosensor applications. Langmuir 18, 6671–6678.
Ostuni, E., Chapman, R. G., Liang, M. N., Meluleni, G., Pier, G., Ingber, D. E., and Whitesides, G. M. (2001) Self-assembled monolayers that resist the adsorption of proteins and the adhesion of bacterial and mammalian cells. Langmuir 17, 6336–6343.
Schwendel, D., Dahint, R., Herrwerth, S., Schloerholz, M., Eck, W., and Grunze, M. (2001) Temperature dependence of the protein resistance of poly- and oligo(ethylene glycol)-terminated alkanethiolate monolayers. Langmuir 17, 5717–5720.
Ostuni, E., Chapman, R. G., Holmlin, R. E., Takayama, S., and Whitesides, G. M. (2001) A survey of structure-property relationships of surfaces that resist the adsorption of protein. Langmuir 17, 5605–5620.
Zhu, B., Eurell, T., Gunawan, R., and Leckband, D. (2001) Chain-length dependence of the protein and cell resistance of oligo(ethylene glycol)-terminated self-assembled monolayers on gold. J. Biomed. Mater. Res. 56, 406–416.
Holmlin, R. E., Chen, X., Chapman, R. G., Takayama, S., and Whitesides, G. M. (2001) Zwitterionic SAMs that resist nonspecific adsorption of protein from aqueous buffer. Langmuir 17, 2841–2850.
Chapman, R. G., Ostuni, E., Liang, M. N., Meluleni, G., Kim, E., Yan, L., Pier, G., Warren, H. S., and Whitesides, G. M. (2001) Polymeric thin films that resist the adsorption of proteins and the adhesion of bacteria. Langmuir 17, 1225–1233.
Chapman, R. G., Ostuni, E., Takayama, S., Holmlin, R. E., Yan, L., and Whitesides, G. M. (2000) Surveying for surfaces that resist the adsorption of proteins. J. Am. Chem. Soc. 122, 8303–8304.
Chapman, R. G., Ostuni, E., Yan, L., and Whitesides, G. M. (2000) Preparation of mixed Self-Assembled Monolayers (SAMs) that resist adsorption of proteins using the reaction of amines with a SAM that presents interchain carboxylic anhydride groups. Langmuir 16, 6927–6936.
Ostuni, E., Yan, L., and Whitesides, G. M. (1999) The interaction of proteins and cells with self-assembled monolayers of alkanethiolates on gold and silver. Colloids Surf. 15, 3–30.
Pertsin, A. J., Grunze, M., and Garbuzova, I. A. (1998) Low-energy configurations of methoxy triethylene glycol terminated alkanethiol self-assembled monolayers and their relevance to protein adsorption. J. Phys. Chem. B 102, 4918–4926.
Mrksich, M., Dike, L. E., Tien, J., Ingber, D. E., and Whitesides, G. M. (1997) Using microcontact printing to pattern the attachment of mammalian cells to self-assembled monolayers of alkanethiolates on transparent films of gold and silver. Exper. Cell Res. 235, 305–313.
Mrksich, M., Chen, C. S., Xia, Y., Dike, L. E., Ingber, D. E., and Whitesides, G. M. (1996) Controlling cell attachment on contoured surfaces with self-assembled monolayers of alkanethiolates on gold. Proc. Nat. Acad. Sci. U.S.A. 93, 10775–10778.
DiMilla, P. A., Folkers, J. P., Biebuyck, H. A., Haerter, R., Lopez, G. P., and Whitesides, G. M. (1994) Wetting and Protein Adsorption on Self-Assembled Monolayers of Alkanethiolates Supported on Transparent Films of Gold. J. Am. Chem. Soc. 116, 2225–2226.
Donzel, C., Geissler, M., Bernard, A., Wolf, H., Michel, B., Hilborn, J., and Delamarche, E. (2001) Hydrophilic poly(dimethylsiloxane) stamps for microcontact printing. Adv. Mater. 13, 1164–1167.
Bernard, A., Renault, J. P., Michel, B., Bosshard, H. R., and Delamarche, E. (2000) Microcontact printing of proteins. Adv. Mater. 12, 1067–1070.
Graber, D. J., Zieziulewics, T. J., Lawrence, D. A., Shain, W., and Turner, J. N. (2003) Antigen binding specificity of antibodies patterned by microcontact printing. Langmuir 19, 5431–5434.
Renault, J. P., Bernard, A., Bietsch, A., Michel, B., Bosshard, H. R., Delamarche, E., Kreiter, M., Hecht, B., and Wild, U. P. (2003) Fabricating arrays of single protein molecules on glass using microcontact printing. J. Phys. Chem. B 107, 703–711.
Renault, J. P., Bernard, A., Juncker, D., Michel, B., Bosshard, H. R., and Delamarche, E. (2002) Fabricating microarrays of functional proteins using affinity contact printing. Angew. Chem. Int. Ed. 41, 2320–2323.
Tan, J. L., Tien, J., and Chen, C. S. (2002) Microcontact printing of proteins on mixed self-assembled monolayers. Langmuir 18, 519–523.
Xu, C., Taylor, P., Ersoz, M., Fletcher, P. D. I., and Paunov, V. N. (2003) Microcontact printing of DNA-surfactant arrays on solid substrates. J. Mater. Chem. 13, 3044–3048.
Lange, S. A., Benes, V., Kern, D. P., Hoerber, J. K. H., and Bernard, A. (2004) Microcontact printing of DNA molecules. Anal. Chem. 76, 1641–1647.
Lahiri, J., Ostuni, E., and Whitesides, G. M. (1999) Patterning ligands on reactive SAMs by microcontact printing. Langmuir 15, 2055–2060.
Chen, C. S., Mrksich, M., Huang, S., Whitesides, G. M., and Ingber, D. E. (1997) Geometric control of cell life and death. Science 276, 1425-1428.
Ostuni, E., Grzybowski, B., Mrksich, M., Roberts, C. S., and Whitesides, G. M. (2003) Adsorption of proteins to hydrophobic sites on mixed self-assembled monolayers. Langmuir 19, 1861–1872.
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Wolfe, D.B., Qin, D., Whitesides, G.M. (2010). Rapid Prototyping of Microstructures by Soft Lithography for Biotechnology. In: Hughes, M., Hoettges, K. (eds) Microengineering in Biotechnology. Methods in Molecular Biology, vol 583. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-60327-106-6_3
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