Skip to main content

Use of RNA Aptamers for the Modulation of Cancer Cell Signaling

  • Protocol
  • First Online:
Book cover Gene Therapy of Cancer

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 542))

Summary

Aptamers are in vitro evolved molecules that bind to target proteins with high affinity and specificity by adapting three-dimensional structures upon binding. Because cancer cells exhibit the activation of signaling pathways that are not usually activated in normal cells, RNA aptamers against such a cancer cell-specific signal can be useful lead molecules for cancer gene therapy. The Wnt/β-catenin signaling pathway plays important roles in a critical initiating event in the formation of various human cancers. Because mutations in β-catenin have been found to be responsible for human tumorigenesis, β-catenin is the molecular target for effective anticancer therapies. Here, we describe the selection of RNA aptamers against β-catenin/transcription factor (TCF) proteins and their intracellular expression as intramers. The RNA aptamers acted as central inhibitory players for multiple oncogenic functions of β-catenin in colon cancer cells. These data provide the proof-of-principle for the use of RNA aptamers for an effective anticancer gene therapy.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Tuerk, C. and Gold, L. (1990) Systemic evolution of ligands by exponential enrichment: RNA lignads to bacteriophage T4 DNA polymerase. Science 249, 505–510.

    Article  PubMed  CAS  Google Scholar 

  2. Ellington, A. D. and Szostak, J. W. (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818–822.

    Article  PubMed  CAS  Google Scholar 

  3. Robertson, D. L. and Joyce, G. F. (1990) Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nat. Struct. Biol. 344, 467–468.

    CAS  Google Scholar 

  4. Bunka, D. H. and Stockley, P. G. (2006) Aptamers come of age - at last. Nat. Rev. Microbiol. 4, 588–596.

    Article  PubMed  CAS  Google Scholar 

  5. Lee, J. F., Stovall, G. M. and Ellington, A. D. (2006) Aptamer therapeutics advance. Curr. Opin. Chem. Biol. 10, 282–289.

    Article  PubMed  CAS  Google Scholar 

  6. Que-Gewirth, N. S. and Sullenger, B. A. (2007) Gene therapy progress and prospects: RNA aptamers. Gene Therapy 14, 283–291.

    Article  PubMed  CAS  Google Scholar 

  7. Farokhzad, O. C., Cheng, J., Teply, B. A., Sherifi, I., Jon, S., Kantoff, P. W., Richie, J. P., and Langer, R. (2006) Targeted nanoparticle-aptamer bioconjugates for cancer chemotherapy in vivo. Proc. Natl. Acad. Sci. U.S.A. 103, 6315–6320.

    Article  PubMed  CAS  Google Scholar 

  8. Proske, D., Blank, M., Buhmann, R., and Resch, A. (2005) Aptamers-basic research, drug development, and clinical applications.Appl. Microbiol. Biotechnol. 69, 367–374.

    Article  PubMed  CAS  Google Scholar 

  9. Chu, T. C., Marks, J. W. III, lavery, L, A., Faulkner, S., Rosenblum, M. G., Ellington, A. D., and Levy, M. (2006) Aptamer:Toxin conjugates that specifically target prostate tumor cells. Cancer Res. 66, 5989–5992.

    Article  PubMed  CAS  Google Scholar 

  10. Polakis, P. (2000) Wnt signaling and cancer. Genes Dev. 14, 1837–1851.

    PubMed  CAS  Google Scholar 

  11. Huelsken, J. and Birchmeier, W. (2001) New aspects of Wnt signaling pathways in higher vertebrates. Curr. Opin. Genet. Dev. 11, 547–553.

    Article  PubMed  CAS  Google Scholar 

  12. Gregorieff, A. and Clevers, H. (2005) Wnt signaling in the intestinal epithelium: from endoderm to cancer. Genes Dev. 19, 877–890.

    Article  PubMed  CAS  Google Scholar 

  13. Tetsu, O. and McCormick, F. (1999) β:-catenin regulates expression of cyclin D1 in colon carcinoma cells. Nature 398, 422–426.

    Article  PubMed  CAS  Google Scholar 

  14. He, T. C., Sparks, A. B., Rago, C., Hermeking, H., Zawel, L., da Costa, L. T., Morin, P. J., Vogelstein, B., and Kinzler, K. W. (1998) Identification of c-MYC as a target of the APC pathway. Science 281, 1509–1512.

    Article  PubMed  CAS  Google Scholar 

  15. Sato, S., Idogawa, M., Honda, K., Fujii, G., Kawashima, H., Takekuma, K., Hoshika, A., Hirohashi, S., and Yamada, T. (2005) β-Catenin interacts with the FUS proto-oncogene product and regulates pre mRNA splicing. Gastroenterology 129, 1225–1236.

    Article  PubMed  CAS  Google Scholar 

  16. Lee, H. K., Choi, Y. S., Park, Y. A., and Jeong, S. (2006) Modulation of oncogenic transcription and alternative splicing by β-catenin and an RNA aptamer in colon cancer cells. Cancer Res. 66, 10560–10566.

    Article  PubMed  CAS  Google Scholar 

  17. Lee, H. K. and Jeong, S. (2006) β:-Catenin stabilizes Cyclooxygenase-2 mRNA by interacting with AU-rich elements of 3'-UTR. Nucleic Acids Res. 34, 5705–5714.

    Article  PubMed  CAS  Google Scholar 

  18. Lee, H. K., Kwak, H. Y., Hur, J., Kim, I. A., Yang, J. S., Park, M. W., Yu, J., and Jeong, S. (2007) β-Catenin regulates multiple steps of RNA metabolism as revealed by the RNA aptamer in colon cancer cells. Cancer Res. 67, 9315–9321.

    Article  PubMed  CAS  Google Scholar 

  19. Miller, D., Laber, D., Bates, P., Trent, J., Taft, B., and Kloecker, G.H. (2006) Extended phase I study of AS1411 in renal and non-small cell lung cancers. Ann. Oncol. 17, ix147–148.

    Google Scholar 

  20. Famulok, M. and Mayer, G. (2005) Intramers and aptamers: applications in protein-function analyses and potential for drug screening. Chem. Bio. Chem. 6, 19–26.

    PubMed  CAS  Google Scholar 

  21. Choi, K. H., Park, M. W., Lee, S. Y., Jeon, M. Y., Kim, M. Y., Lee, H. K., Yu, J., J. W. (2006) In vitro selection of RNA molecules that bind specific ligands. Mol Cancer Ther 5, 1418–1434.

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This study was supported by grants from the Korea Research Foundation, the Korea Science and Engineering Foundation, the Korean Ministry of Sciences and Technology, and the Korean Ministry of Health and Welfare.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sunjoo Jeong .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Humana Press, a part of Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Jeong, S., Lee, H.K., Kim, M.Y. (2009). Use of RNA Aptamers for the Modulation of Cancer Cell Signaling. In: Walther, W., Stein, U. (eds) Gene Therapy of Cancer. Methods in Molecular Biology™, vol 542. Humana Press. https://doi.org/10.1007/978-1-59745-561-9_20

Download citation

  • DOI: https://doi.org/10.1007/978-1-59745-561-9_20

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-934115-85-5

  • Online ISBN: 978-1-59745-561-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics