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Affinity Maturation by Phage Display

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Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 525))

Abstract

Antibodies are indispensable tools for research, diagnostics, and therapy. However, sometimes antibodies with the most favourable specificity profile lack sufficient affinity for a desired application. Here, we describe a method to increase the affinity of recombinant scFv antibody fragments based on random mutagenesis and phage display under stringent conditions. Random mutations are inserted by performing several rounds of error-prone PCR. After construction of a mutated antibody gene library, affinity selection is performed by panning with washing conditions optimized for off-rate-dependent selection. Alternatively, panning in solution with competition can be used to enrich binders with improved binding properties.

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References

  1. Evans, D. and Das, R. (2005) Monoclonal Antibodies: Evolving into a $30 Billion Market. DataMonitor, London, UK.

    Google Scholar 

  2. Hust, M. and Dübel, S. (2004) Mating antibody phage display with proteomics. Trends Biotechnol. 22, 8–14.

    Article  PubMed  CAS  Google Scholar 

  3. Sblattero, D. and Bradbury, A. (2000) Exploiting recombination in single bacteria to make large phage antibody libraries. Nat. Biotech. 18, 75–80.

    Article  CAS  Google Scholar 

  4. Coia, G., Hudson, P. J., and Irving, R. A. (2001) Protein affinity maturation in vivo using E. coli mutator cells. J. Immunol. Methods 251, 187–193.

    Article  PubMed  CAS  Google Scholar 

  5. Low, N. M., Holliger, P. H., and Winter, G. (1996) Mimicking somatic hypermutation: Affinity maturation of antibodies displayed on bacteriophage using a bacterial mutator strain. J. Mol. Biol. 260, 359–368.

    Article  PubMed  CAS  Google Scholar 

  6. Yau, K. Y. F., Dubuc, G., Li, S., Hirama, T., Mackenzie, C. R., Jermutus, L., Hall, J. C., and Tanha, J. (2005) Affinity maturation of a V(H)H by mutational hotspot randomization. J. Immunol. Methods 297, 213–224.

    Article  PubMed  CAS  Google Scholar 

  7. Irving, R. A., Kortt, A. A., and Hudson, P. J. (1996) Affinity maturation of recombinant antibodies using E. coli mutator cells. Immunotechnology 2, 127–143.

    Article  PubMed  CAS  Google Scholar 

  8. Fujii, R., Kitaoka, M., and Hayashi, K. (2004) One-step random mutagenesis by error-prone rolling circle amplification. Nucleic Acids Res. 32, e145.

    Article  PubMed  Google Scholar 

  9. Martineau, P. (2002) Error-prone polymerase chain reaction for modification of scFvs. Methods Mol. Biol. 178, 287–294.

    PubMed  CAS  Google Scholar 

  10. Tindall, K. R. and Kunkel, T. A. (1988) Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase. Biochemistry 27, 6008–6013.

    Article  PubMed  CAS  Google Scholar 

  11. Hust, M., Dübel, S., and Schirrmann, T. (2007) Selection of recombinant antibodies from antibody gene libraries. Gene Function Analysis, Ed: Ochs, M. F., Methods Mol. Biol. 408, 241–254.

    Google Scholar 

  12. Schier, R., Bye, J., Apell, G., McCall, A., Adams, G. P., Malmqvist, M., Weiner, L. M., and Marks, J. D. (1996) Isolation of high-affinity monomeric human anti-c-erbB-2 single chain Fv using affinity-driven selection. J. Mol. Biol. 255, 28–43.

    Article  PubMed  CAS  Google Scholar 

  13. Konthur, Z., Hust, M., and Dübel, S. (2005) Perspectives for systematic in vitro antibody generation. Gene 364, 19–29.

    Article  PubMed  CAS  Google Scholar 

  14. Friguet, B., Chaffotte, A. F., Djavadi-Ohaniance, L., and Goldberg, M. E. (1985) Measurements of the true affinity constant in solution of antigen–antibody complexes by enzyme-linked immunosorbent assay. J. Immunol. Methods 77, 305–319.

    Article  PubMed  CAS  Google Scholar 

  15. Wassaf, D., Kuang, G., Kopacz, K., Wu, Q., Nguyen, Q., Toews, M., Cosic, J., Jacques, J., Wiltshire, S., Lambert, J., Pazmany, C. C., Hogan, S., Ladner, R. C., Nixon, A. E., and Sexton, D. J. (2006) High-throughput affinity ranking of antibodies using surface plasmon resonance microarrays. Anal. Biochem. 351, 241–253.

    Article  PubMed  CAS  Google Scholar 

  16. Hust, M., Toleikis, L., and Dübel, S. (2007) Antibody phage display. Handbook of Therapeutic Antibodies, Ed: Dübel, S., Willey-VCH, Weinheim.

    Google Scholar 

  17. Sambrook, J. and Russell, D. W. (2001) Molecular cloning: A Laboratory Manual, 3rd edition. Cold Spring Harbor Laboratory Press, New York.

    Google Scholar 

  18. Welschof, M., Terness, P., Kipriyanov, S., Stanescu, D., Breitling, F., Dörsam, H., Dübel, S., Little, M., and Opelz, G. (1997) The antigen binding domain of a human IgG-anti-F(ab')2 autoantibody. Proc. Natl. Acad. Sci. USA 94, 1902–1907.

    Article  PubMed  CAS  Google Scholar 

  19. Kirsch, M., Zaman, M., Meier, D., Dübel, S., and Hust, M. (2005) Parameters affecting the display of antibodies on phage. J. Immunol. Methods 301, 173–185.

    Article  PubMed  CAS  Google Scholar 

  20. Goletz, A., Cristensen, P. A., Kristensen, P., Blohm, D., Tomlinson, I., Winter, G., and Karsten, U. (2002) Selection of large diversities of antiidiotypic antibody fragments by phage display. J. Mol. Biol. 315, 1087–1097.

    Article  PubMed  CAS  Google Scholar 

  21. Finnern, R., Pedrollo, E., Fisch, I., Wieslander, J., Marks, J. D., Lockwood, C. M., and Ouwehand, W. H. (1997) Human autoimmune anti-proteinase 3 scFv from a phage display library. Clin. Exp. Immunol. 107, 269–281.

    Article  PubMed  CAS  Google Scholar 

  22. Pelat, T., Hust, M., Laffly, E., Condemine, F., Bottex, C., Vidal, D., Lefranc, M., Dübel, S., and Thullier, P. (2007) High-affinity, human antibody-like antibody fragment (single-chain variable fragment) neutralizing the lethal factor (LF) of Bacillus anthracis by inhibiting protective antigen-LF complex formation. Antimicrob. Agents Chemother. 51, 2758–2764.

    Article  PubMed  CAS  Google Scholar 

  23. Mersmann, M., Schmidt, A., Tesar, M., Schoneberg, A., Welschof, M., Kipriyanov, S., Terness, P., Little, M., Pfizenmaier, K., and Moosmayer D. (1998). Monitoring of scFv selected by phage display using detection of scFv-pIII fusion proteins in a microtiter scale assay. J. Immunol. Methods 220, 51–58.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

We gratefully acknowledge the financial support by the German Research Foundation (DFG, SFB 578) and the German ministry of education and research (BMBF, SMP “Antibody Factory” in the NGFN2 program).

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© 2009 Humana Press, a part of Springer Science+Business Media, LLC

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Thie, H., Voedisch, B., Dübel, S., Hust, M., Schirrmann, T. (2009). Affinity Maturation by Phage Display. In: Dimitrov, A. (eds) Therapeutic Antibodies. Methods in Molecular Biology™, vol 525. Humana Press. https://doi.org/10.1007/978-1-59745-554-1_16

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  • DOI: https://doi.org/10.1007/978-1-59745-554-1_16

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-934115-92-3

  • Online ISBN: 978-1-59745-554-1

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