Abstract
Antibodies are indispensable tools for research, diagnostics, and therapy. However, sometimes antibodies with the most favourable specificity profile lack sufficient affinity for a desired application. Here, we describe a method to increase the affinity of recombinant scFv antibody fragments based on random mutagenesis and phage display under stringent conditions. Random mutations are inserted by performing several rounds of error-prone PCR. After construction of a mutated antibody gene library, affinity selection is performed by panning with washing conditions optimized for off-rate-dependent selection. Alternatively, panning in solution with competition can be used to enrich binders with improved binding properties.
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Evans, D. and Das, R. (2005) Monoclonal Antibodies: Evolving into a $30 Billion Market. DataMonitor, London, UK.
Hust, M. and Dübel, S. (2004) Mating antibody phage display with proteomics. Trends Biotechnol. 22, 8–14.
Sblattero, D. and Bradbury, A. (2000) Exploiting recombination in single bacteria to make large phage antibody libraries. Nat. Biotech. 18, 75–80.
Coia, G., Hudson, P. J., and Irving, R. A. (2001) Protein affinity maturation in vivo using E. coli mutator cells. J. Immunol. Methods 251, 187–193.
Low, N. M., Holliger, P. H., and Winter, G. (1996) Mimicking somatic hypermutation: Affinity maturation of antibodies displayed on bacteriophage using a bacterial mutator strain. J. Mol. Biol. 260, 359–368.
Yau, K. Y. F., Dubuc, G., Li, S., Hirama, T., Mackenzie, C. R., Jermutus, L., Hall, J. C., and Tanha, J. (2005) Affinity maturation of a V(H)H by mutational hotspot randomization. J. Immunol. Methods 297, 213–224.
Irving, R. A., Kortt, A. A., and Hudson, P. J. (1996) Affinity maturation of recombinant antibodies using E. coli mutator cells. Immunotechnology 2, 127–143.
Fujii, R., Kitaoka, M., and Hayashi, K. (2004) One-step random mutagenesis by error-prone rolling circle amplification. Nucleic Acids Res. 32, e145.
Martineau, P. (2002) Error-prone polymerase chain reaction for modification of scFvs. Methods Mol. Biol. 178, 287–294.
Tindall, K. R. and Kunkel, T. A. (1988) Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase. Biochemistry 27, 6008–6013.
Hust, M., Dübel, S., and Schirrmann, T. (2007) Selection of recombinant antibodies from antibody gene libraries. Gene Function Analysis, Ed: Ochs, M. F., Methods Mol. Biol. 408, 241–254.
Schier, R., Bye, J., Apell, G., McCall, A., Adams, G. P., Malmqvist, M., Weiner, L. M., and Marks, J. D. (1996) Isolation of high-affinity monomeric human anti-c-erbB-2 single chain Fv using affinity-driven selection. J. Mol. Biol. 255, 28–43.
Konthur, Z., Hust, M., and Dübel, S. (2005) Perspectives for systematic in vitro antibody generation. Gene 364, 19–29.
Friguet, B., Chaffotte, A. F., Djavadi-Ohaniance, L., and Goldberg, M. E. (1985) Measurements of the true affinity constant in solution of antigen–antibody complexes by enzyme-linked immunosorbent assay. J. Immunol. Methods 77, 305–319.
Wassaf, D., Kuang, G., Kopacz, K., Wu, Q., Nguyen, Q., Toews, M., Cosic, J., Jacques, J., Wiltshire, S., Lambert, J., Pazmany, C. C., Hogan, S., Ladner, R. C., Nixon, A. E., and Sexton, D. J. (2006) High-throughput affinity ranking of antibodies using surface plasmon resonance microarrays. Anal. Biochem. 351, 241–253.
Hust, M., Toleikis, L., and Dübel, S. (2007) Antibody phage display. Handbook of Therapeutic Antibodies, Ed: Dübel, S., Willey-VCH, Weinheim.
Sambrook, J. and Russell, D. W. (2001) Molecular cloning: A Laboratory Manual, 3rd edition. Cold Spring Harbor Laboratory Press, New York.
Welschof, M., Terness, P., Kipriyanov, S., Stanescu, D., Breitling, F., Dörsam, H., Dübel, S., Little, M., and Opelz, G. (1997) The antigen binding domain of a human IgG-anti-F(ab')2 autoantibody. Proc. Natl. Acad. Sci. USA 94, 1902–1907.
Kirsch, M., Zaman, M., Meier, D., Dübel, S., and Hust, M. (2005) Parameters affecting the display of antibodies on phage. J. Immunol. Methods 301, 173–185.
Goletz, A., Cristensen, P. A., Kristensen, P., Blohm, D., Tomlinson, I., Winter, G., and Karsten, U. (2002) Selection of large diversities of antiidiotypic antibody fragments by phage display. J. Mol. Biol. 315, 1087–1097.
Finnern, R., Pedrollo, E., Fisch, I., Wieslander, J., Marks, J. D., Lockwood, C. M., and Ouwehand, W. H. (1997) Human autoimmune anti-proteinase 3 scFv from a phage display library. Clin. Exp. Immunol. 107, 269–281.
Pelat, T., Hust, M., Laffly, E., Condemine, F., Bottex, C., Vidal, D., Lefranc, M., Dübel, S., and Thullier, P. (2007) High-affinity, human antibody-like antibody fragment (single-chain variable fragment) neutralizing the lethal factor (LF) of Bacillus anthracis by inhibiting protective antigen-LF complex formation. Antimicrob. Agents Chemother. 51, 2758–2764.
Mersmann, M., Schmidt, A., Tesar, M., Schoneberg, A., Welschof, M., Kipriyanov, S., Terness, P., Little, M., Pfizenmaier, K., and Moosmayer D. (1998). Monitoring of scFv selected by phage display using detection of scFv-pIII fusion proteins in a microtiter scale assay. J. Immunol. Methods 220, 51–58.
Acknowledgments
We gratefully acknowledge the financial support by the German Research Foundation (DFG, SFB 578) and the German ministry of education and research (BMBF, SMP “Antibody Factory” in the NGFN2 program).
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© 2009 Humana Press, a part of Springer Science+Business Media, LLC
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Thie, H., Voedisch, B., Dübel, S., Hust, M., Schirrmann, T. (2009). Affinity Maturation by Phage Display. In: Dimitrov, A. (eds) Therapeutic Antibodies. Methods in Molecular Biology™, vol 525. Humana Press. https://doi.org/10.1007/978-1-59745-554-1_16
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DOI: https://doi.org/10.1007/978-1-59745-554-1_16
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