Summary
Far-western blotting is a convenient method to characterize protein–protein interactions, in which protein samples of interest are immobilized on a membrane and then probed with a nonantibody protein. In contrast to western blotting, which uses specific antibodies to detect target proteins, far-western blotting detects proteins on the basis of the presence or the absence of binding sites for the protein probe. When specific modular protein binding domains are used as probes, this approach allows characterization of protein–protein interactions involved in biological processes such as signal transduction, including interactions regulated by posttranslational modification. We here describe a rapid and simple protocol for far-western blotting, in which GST-tagged Src homology 2 (SH2) domains are used to probe cellular proteins in a phosphorylation-dependent manner.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Edmondson, D. G., and Dent, S. Y. (2001) Identification of protein interactions by far western analysis, in: Current Protocols in Protein Science (Coligen, J. E., Ed.), Vol. 2, pp. 1–10, Wiley, Hoboken, NJ.
Hoeffler, J. P., Lustbader, J. W., and Chen, C. Y. (1991) Identification of multiple nuclear factors that interact with cyclic adenosine 3′,5′-monophosphate response element-binding protein and activating transcription factor-2 by protein–protein interactions. Mol Endocrinol 5, 256–266.
Akiyama, T., Ohuchi, T., Sumida, S., Xu, S. Q., and Toyoshima, K. (1992) Phosphorylation of the anti-oncogene products and control of the cell cycle. Tohoku J Exp Med 168, 153–157.
Hall, R. A. (2004) Studying protein–protein interactions via blot overlay or Far western blot. Methods Mol Biol 261, 167–174.
Cicchetti, P., Mayer, B. J., Thiel, G., and Baltimore, D. (1992) Identification of a protein that binds to the SH3 region of Abl and is similar to Bcr and GAP-rho. Science 257, 803–806.
Macgregor, P. F., Abate, C., and Curran, T. (1990) Direct cloning of leucine zipper proteins: Jun binds cooperatively to the CRE with CRE-BP1. Oncogene 5, 451–458.
Blackwood, E. M., and Eisenman, R. N. (1991) Max: a helix-loop-helix zipper protein that forms a sequence-specific DNA-binding complex with Myc. Science 251, 1211–1217.
Nollau, P., and Mayer, B. J. (2001) Profiling the global tyrosine phosphorylation state by Src homology 2 domain binding. Proc Natl Acad Sci USA 98, 13531–13536.
Machida, K., Thompson, C. M., Dierck, K., Jablonowski, K., Karkkainen, S., Liu, B., Zhang, H., Nash, P. D., Newman, D. K., Nollau, P., Pawson, T., Renkema, G. H., Saksela, K., Schiller, M. R., Shin, D. G., and Mayer, B. J. (2007) High-throughput phosphotyrosine profiling using SH2 domains. Mol Cell 26, 899–915.
Moorhead, G., and MacKintosh, C. (2004) Affinity methods for phosphorylation-dependent interactions. Methods Mol Biol 261, 469–478.
Burnham, M. R., DeBerry, R., and Bouton, A. H. (2001) Detection of phosphorylation-dependent interactions by far-western gel overlay. Methods Mol Biol 124, 209–220.
Einarson, M. B., and Orlinick, J. R. (2002) Identification of protein–protein interactions with glutathione-s-transferase fusion proteins, in: Protein–Protein Interactions (Golemis, E., Ed.), pp. 37–57, Cold Spring Harbor Press, Cold Spring Harbor, NY.
Smith, D. B., and Johnson, K. S. (1988) Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase. Gene 67, 31–40.
Mayer, B. J., Jackson, P. K., Van Etten, R. A., and Baltimore, D. (1992) Point mutations in the abl SH2 domain coordinately impair phosphotyrosine binding in vitro and transforming activity in vivo. Mol Cell Biol 12, 609–618.
Babon, J. J., McManus, E. J., Yao, S., DeSouza, D. P., Mielke, L. A., Sprigg, N. S., Willson, T. A., Hilton, D. J., Nicola, N. A., Baca, M., Nicholson, S. E., and Norton, R. S. (2006) The structure of SOCS3 reveals the basis of the extended SH2 domain function and identifies an unstructured insertion that regulates stability. Mol Cell 22, 205–216.
Lamla, T., Hoerer, S., and Bauer, M. M. (2006) Screening for soluble expression constructs using cell-free protein synthesis. Int J Biol Macromol 39, 111–121.
Welsh, M., Mares, J., Karlsson, T., Lavergne, C., Breant, B., and Claesson-Welsh, L. (1994) Shb is a ubiquitously expressed Src homology 2 protein. Oncogene 9, 19–27.
Jones, R. B., Gordus, A., Krall, J. A., and MacBeath, G. (2006) A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature 439, 168–174.
Acknowledgments
We are grateful to P. Nollau for his effort for the early development of the method, C. Thompson for technical assistance, K. Claffey for breast cancer samples, and A. Das for a bacterial culture system. This work was partially supported by grants from Breast Cancer Alliance and Connecticut Breast Health Initiative (to K.M.) and NIH grant CA107785 (to B.J.M.).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2009 Humana Press, a part of Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Machida, K., Mayer, B.J. (2009). Detection of Protein-Protein Interactions by Far-Western Blotting. In: Kurien, B., Scofield, R. (eds) Protein Blotting and Detection. Methods in Molecular Biology, vol 536. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-59745-542-8_34
Download citation
DOI: https://doi.org/10.1007/978-1-59745-542-8_34
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-934115-73-2
Online ISBN: 978-1-59745-542-8
eBook Packages: Springer Protocols