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Microchip Electrophoresis for DNA Separation by Wire-Imprinted Microchannels on PMMA Substrates

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Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 385))

Abstract

Microchip electrophoresis has become a mature separation technique in recent years. Compared to agarose gel electrophoresis, which is commonly used for DNA separation, microchip electrophoresis has several advantages such as automation, fast analysis speed and minimum sample requirement. For the fabrication of electrophoretic microchips, silica-based and polymer-based materials are two commonly used substrates. Among the polymer-based materials, poly(methyl methacrylate) (PMMA) substrate can be wire-imprinted in a common laboratory to form microfluidic channels without expensive fabrication facilities. Moreover, the neutral hydrophilic surface chemistry of PMMA allows direct DNA separation to be performed on bare microchips without the tedious surface modifications that are normally required for silica-based materials. This chapter presents an imprinting method for fabricating PMMA microchips as well as the on-chip assay for performing electrophoretic DNA separation on the fabricated microchip.

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References

  1. Harrison, D. J., Fluri, K., Seiler, Z. Fan, Effenhauser, C. S., and Manz, A. (1993) Micromachining a miniaturized capillary electrophoresis-based chemical analysis system on a chip. Science 261, 895–897.

    Article  CAS  Google Scholar 

  2. Harrison, D. J., Manz, A., Fan, Z., Ludi, H., and Widmer, H. M. (1992) Capillary electrophoresis and sample injection systems integrated on a planar glass chip. Anal. Chem. 64, 1926–1932.

    Article  CAS  Google Scholar 

  3. Raymond, D. E., Manz, A., and Widmer, H. M. (1994) Continuous sample pretreatment using a free-flow electrophoresis device integrated onto a silicon chip. Anal. Chem. 66, 2858–2865.

    Article  CAS  Google Scholar 

  4. Regnier, F. E., He, B., Lin, S., and Busse, J. (1999) Chromatography and electrophoresis on chips: critical elements of future integrated, microfluidic analytical systems for life science. Trends Biotechnol. 17, 101–106.

    Article  CAS  Google Scholar 

  5. Effenhauser, C. S., Paulus, A., Manz, A., and Widmer, H. M. (1994) High-speed separation of antisense oligonucleotides on a micromachined capillary electrophoresis device. Anal. Chem. 66, 2949–2953.

    Article  CAS  Google Scholar 

  6. Martynova, L., Locascio, L. E., Gaitan, M., Kramer, G.. W., Christensen, R. G., and MacCrehan, W. A. (1997) Fabrication of plastic microfluid channels by imprinting methods. Anal. Chem. 69, 4783–4789.

    Article  CAS  Google Scholar 

  7. Chen, Y.-H. and Chen, S.-H. (2000) Analysis of DNA fragments by microchip electrophoresis fabricated on poly(methyl methacrylate) substrates using wire-imprinting method. Electrophoresis 21, 165–170.

    Article  CAS  Google Scholar 

  8. Chen, Y.-H., Wang, W.-C., Young, K.-C., Chang, T.-T., and Chen, S.-H. (1999) Plastic microchip electrophoresis for analysis of PCR products of serum hepatitis C virus. Clin. Chem. 45, 1938–1943.

    CAS  Google Scholar 

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© 2007 Humana Press Inc., Totowa, NJ

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Chen, SH. (2007). Microchip Electrophoresis for DNA Separation by Wire-Imprinted Microchannels on PMMA Substrates. In: Floriano, P.N. (eds) Microchip-Based Assay Systems. Methods in Molecular Biology™, vol 385. Humana Press. https://doi.org/10.1007/978-1-59745-426-1_1

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  • DOI: https://doi.org/10.1007/978-1-59745-426-1_1

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-588-0

  • Online ISBN: 978-1-59745-426-1

  • eBook Packages: Springer Protocols

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