Abstract
Access to high-quality fresh frozen tissue is critical for translational cancer research and molecular diagnostics. Here we describe a workflow for the collection of frozen solid tissue samples derived from fresh human patient specimens after surgery. The routines have been in operation at Uppsala University Hospital since 2001. We have integrated cryosection and histopathologic examination of each biobank sample into the biobank manual. In this way, even small, macroscopically ill-defined lesions can be procured without a diagnostic hazard due to the removal of uncharacterized tissue from a clinical specimen. Also, knowledge of the histomorphology of the frozen tissue sample – tumor cell content, stromal components, and presence of necrosis – is pivotal before entering a biobank case into costly molecular profiling studies.
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References
Mager, S.R., Oomen, M.H., Morente, M.M., Ratcliffe, C., Knox, K., Kerr, D.J., Pezzella, F., and Riegman, P.H. (2007) Standard operating procedure for the collection of fresh frozen tissue samples. Eur J Cancer 43, 828–34.
Morente, M.M., Mager, R., Alonso, S., Pezzella, F., Spatz, A., Knox, K., Kerr, D., Dinjens, W.N., Oosterhuis, J.W., Lam, K.H., Oomen, M.H., van Damme, B., van de Vijver, M., van Boven, H., Kerjaschki, D., Pammer, J., Lopez-Guerrero, J.A., Llombart Bosch, A., Carbone, A., Gloghini, A., Teodorovic, I., Isabelle, M., Passioukov, A., Lejeune, S., Therasse, P., van Veen, E.B., Ratcliffe, C., and Riegman, P.H. (2006) TuBaFrost 2: Standardising tissue collection and quality control procedures for a European virtual frozen tissue bank network. Eur J Cancer 42, 2684–91.
Micke, P., Ohshima, M., Tahmasebpoor, S., Zhi-Ping, R., Östman, A., Ponten, F., and Botling, J. (2006) Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens. Lab Invest 86, 202–11.
Micke, P., Kappert, K., Ohshima, M., Sundquist, C., Scheidl, S., Lindahl, P., Heldin, C.H., Botling, J., Ponten, F., and Östman, A. (2007) In situ identification of genes regulated specifically in fibroblasts of human basal cell carcinoma. J Invest Dermatol 127, 1516–23.
Botling, J., Edlund, K., Segersten, U., Tahmasebpoor, S., Engström, M., Sundström, M., Malmström, P.U., and Micke, P. (2009) Impact of thawing on RNA integrity and gene expression analysis in fresh frozen tissue. Diagn Mol Pathol 18, 44–52.
Dimberg, A., Rylova, S., Dieterich, L.C., Olsson, A.K., Schiller, P., Wikner, C., Bohman, S., Botling, J., Lukinius, A., Wawrousek, E.F., and Claesson-Welsh, L. (2008) alphaB-crystallin promotes tumor angiogenesis by increasing vascular survival during tube morphogenesis. Blood 111, 2015–23.
Schmitt, M., Mengele, K., Schueren, E., Sweep, F.C., Foekens, J.A., Brünner, N., Laabs, J., Malik, A., and Harbeck, N. (2007) European Organisation for Research and Treatment of Cancer (EORTC) Pathobiology Group standard operating procedure for the preparation of human tumour tissue extracts suited for the quantitative analysis of tissue-associated biomarkers. Eur J Cancer 43, 835–44.
Acknowledgments
The skillful assistance of Simin Tahmasebpoor is gratefully acknowledged. The Fresh Tissue Biobank at Uppsala University was supported by the Swedish National Biobank Platform funded by Wallenberg Consortium North and Swegene.
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Botling, J., Micke, P. (2011). Biobanking of Fresh Frozen Tissue from Clinical Surgical Specimens: Transport Logistics, Sample Selection, and Histologic Characterization. In: Dillner, J. (eds) Methods in Biobanking. Methods in Molecular Biology, vol 675. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-59745-423-0_16
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DOI: https://doi.org/10.1007/978-1-59745-423-0_16
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