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Detection of Activated Rab7 GTPase with an Immobilized RILP Probe

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Macrophages and Dendritic Cells

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 531))

Summary

The dynamic and coordinated exchange of multiple GTPases between the cytosol and the phagosome membrane represents a critical process during phagosome biogenesis. In particular, acquisition of Rab7 is crucial for progression to the stage where formation of phagolysosomes is observed. Optimal Rab7 effector function requires its conversion to the GTP-bound form where it becomes activated. In light of this regulatory node, the GDP/GTP switch on the Rab7 molecule represents a tractable event to dissect the control of phagosome maturation by intracellular pathogen or their products. Direct measurement of Rab7 activation requires 32P-GTP binding to renatured Rab7 recovered by pull downs and resolved by SDS-Polyacrylamide Gel Electrophoresis (SDS-PAGE) and autoradiography. Here, we describe a novel, alternative, nonradioactive assay to measure Rab7 activity which takes advantage of the specific binding of activated (GTP bound) Rab7 to its effector RILP (Rab7 interacting lysosomal protein). Active Rab7 bound to immobilized recombinant RILP on latex beads can be detected quantitatively by either classical Western blotting or flow cytometry.

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References

  1. Garin J, Diez R, Kieffer S, Dermine JF, Duclos S, Gagnon E, et al. (2001). The phagosome proteome: insight into phagosome functions. J Cell Biol; 152(1):165–180.

    Article  PubMed  CAS  Google Scholar 

  2. Ali BR, Seabra MC (2005). Targeting of Rab GTPases to cellular membranes. Biochem Soc Trans; 33(Pt 4):652–656.

    PubMed  CAS  Google Scholar 

  3. Desjardins M, Huber LA, Parton RG, Griffiths G (1994). Biogenesis of phagolysosomes proceeds through a sequential series of interactions with the endocytic apparatus. J Cell Biol; 124(5):677–688.

    Article  PubMed  CAS  Google Scholar 

  4. Via LE, Deretic D, Ulmer RJ, Hibler NS, Huber LA, Deretic V (1997). Arrest of mycobacterial phagosome maturation is caused by a block in vesicle fusion between stages controlled by rab5 and rab7. J Biol Chem; 272(20):13326–13331.

    Article  PubMed  CAS  Google Scholar 

  5. Buczynski G, Bush J, Zhang L, Rodriguez-Paris J, Cardelli J (1997). Evidence for a recycling role for Rab7 in regulating a late step in endocytosis and in retention of lysosomal enzymes in Dictyostelium discoideum. Mol Biol Cell; 8(7):1343–1360.

    PubMed  CAS  Google Scholar 

  6. Cantalupo G, Alifano P, Roberti V, Bruni CB, Bucci C (2001). Rab-interacting lysosomal protein (RILP): the Rab7 effector required for transport to lysosomes. EMBO J; 20(4):683–693.

    Article  PubMed  CAS  Google Scholar 

  7. Jordens I, Fernandez-Borja M, Marsman M, Dusseljee S, Janssen L, Calafat J et al (2001). The Rab7 effector protein RILP controls lysosomal transport by inducing the recruitment of dynein-dynactin motors. Curr Biol; 11(21):1680–1685.

    Article  PubMed  CAS  Google Scholar 

  8. Harrison RE, Bucci C, Vieira OV, Schroer TA, Grinstein S (2003). Phagosomes fuse with late endosomes and/or lysosomes by extension of membrane protrusions along microtubules: role of Rab7 and RILP. Mol Cell Biol; 23(18):6494–6506.

    Article  PubMed  CAS  Google Scholar 

  9. Speight P, Silverman M (2005). Diacylglycerol-activated Hmunc13 serves as an effector of the GTPase Rab34. Traffic; 6(10):858–865.

    Article  PubMed  CAS  Google Scholar 

  10. Wu M, Wang T, Loh E, Hong W, Song H (2005). Structural basis for recruitment of RILP by small GTPase Rab7. EMBO J; 24(8):1491–1501.

    Article  PubMed  CAS  Google Scholar 

  11. Harrison RE, Brumell JH, Khandani A, Bucci C, Scott CC, Jiang X, et al. (2004). Salmonella impairs RILP recruitment to Rab7 during maturation of invasion vacuoles. Mol Biol Cell; 15(7):3146–3154.

    Article  PubMed  CAS  Google Scholar 

  12. Vieira OV, Bucci C, Harrison RE, Trimble WS, Lanzetti L, Gruenberg J, et al. (2003). Modulation of Rab5 and Rab7 recruitment to phagosomes by phosphatidylinositol 3-kinase. Mol Cell Biol; 23(7):2501–2514.

    Article  PubMed  CAS  Google Scholar 

  13. Callaghan J, Nixon S, Bucci C, Toh BH, Stenmark H (1999). Direct interaction of EEA1 with Rab5b. Eur J Biochem; 265(1):361–366.

    Article  PubMed  CAS  Google Scholar 

  14. Bucci C, Thomsen P, Nicoziani P, McCarthy J, van Deurs B (2000). Rab7: a key to lysosome biogenesis. Mol Biol Cell; 11(2):467–480.

    Google Scholar 

  15. Clemens DL, Lee BY, Horwitz MA (2000). Mycobacterium tuberculosis and Legionella pneumophila phagosomes exhibit arrested maturation despite acquisition of Rab7. Infect Immun; 68(9):5154–5166.

    Article  PubMed  CAS  Google Scholar 

  16. Vitelli R, Santillo M, Lattero D, Chiariello M, Bifulco M, Bruni CB, et al. (1997). Role of the small GTPase Rab7 in the late endocytic pathway. J Biol Chem; 272(7):4391–4397.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

This work was supported by operating grants from the Canadian Institutes of Health Research (CIHR) MOP-67232 and the BC Lung Association. Z.H. was supported by scholar awards from MSFHR and the CIHR. Jim Sun was supported by the TBVets Charitable Foundation.

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Correspondence to Zakaria Hmama .

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© 2009 Humana Press, a part of Springer Science+Business Media, LLC

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Sun, J., Deghmane, AE., Bucci, C., Hmama, Z. (2009). Detection of Activated Rab7 GTPase with an Immobilized RILP Probe. In: Reiner, N. (eds) Macrophages and Dendritic Cells. Methods in Molecular Biology™, vol 531. Humana Press. https://doi.org/10.1007/978-1-59745-396-7_5

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  • DOI: https://doi.org/10.1007/978-1-59745-396-7_5

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-972-7

  • Online ISBN: 978-1-59745-396-7

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