Summary
This chapter discusses in detail a miniaturized version of the widely used permethylation technique which permits quantitative derivatization of oligosaccharides derived from minute quantities of glycoprotein. The approach involves packing of sodium hydroxide powder or beads in a microcolumn format, including spin columns, fused silica capillaries (500 μm i.d.) and plastic tubes (1 mm i.d.). The derivatization proceeds effectively in less than a minute time scale and it is applicable to glycans derived from femtomole quantities of glycoproteins. Prior to mass spectrometry (MS), methyl iodide is added to analytes suspended in dimethyl sulfoxide solution containing traces of water. The reaction mixture is then immediately infused through the microreactor. The packed sodium hydroxide powder or beads inside the microcolumns minimize oxidative degradation and peeling reactions which are otherwise commonly associated with the conventional permethylation technique. In addition, this solid-phase permethylation approach eliminates the need for excessive sample clean-up. As demonstrated below, picomole amounts of various types of glycans derived from model glycoproteins as well as real samples, including linear and branched, sialylated and neutral glycans were shown to become rapidly and efficiently permethylated through this approach.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Muhlecker, W., Gulati, S., McQuillen, D. P., Ram, S., Rice, P. A., andReinhold, V. N. (1999) An essential saccharide binding domain for the MAb 2C7 established for Neisseria gonorrhoeae LOS by ES-MS and MSn. Glycobiology 9, 157–171.
Reinhold, V. N., and Sheeley, D. M. (1998) Detailed characterization of carbohydrate linkage and sequence in an ion trap mass spectrometer: glycosphingolipids. Anal. Biochem. 259, 28–33.
Sheeley, D. M., and Reinhold, V. N. (1998) Structural characterization of carbohydrate sequence, linkage, and branching in a quadrupole ion trap mass spectrometer: Neutral oligosaccharides and N-linked glycans. Anal. Chem. 70, 3053–3059.
Viseux, N., de Hoffmann, E., and Domon, B. (1997) Structural analysis of permethylated oligosaccharides by electrospray tandem mass spectrometry. Anal. Chem. 69, 3193–3198.
Viseux, N., de Hoffmann, E., and Domon, B. (1998) Structural assignment of permethylated oligosaccharide subunits using sequential tandem mass spectrometry. Anal. Chem. 70, 4951–4959.
Weiskopf, A. S., Vouros, P., and Harvey, D. J. (1997) Characterization of oligosaccharide composition and structure by quadrupole ion trap mass spectrometry. Rapid Commun. Mass Spectrom. 11, 1493–1504.
Weiskopf, A. S., Vouros, P., and Harvey, D. J. (1998) Electrospray ionization-ion trap mass spectrometry for structural analysis of complex N-linked glycoprotein oligosaccharides. Anal. Chem. 70, 4441–4447.
Hakomori, S.-I. (1964) Rapid permethylation of glycolipids and polysaccharides, catalyzed by methylsulfinyl carbanion in dimethyl sulfoxide. J. Biochem. 55, 205–208.
Ciucanu, I., and Kerek, F. (1984) A simple and rapid method for the permethylation of carbohydrates. Carbohydr. Res. 131, 209–217.
Ciucanu, I., and Konig, W. (1994) Immobilization of peralkylated β-cyclodextrin on silica gel for high-performance liquid chromatography. J. Chromatogr. A 685, 166–171.
Ciucanu, I., and Luca, C. (1990) Avoidance of degradation during the methylation of uronic acids. Carbohydr. Res. 206, 731–734.
Ciucanu, I., and Gabris, P. (1987) Peralkylation of pentaerythritol for gas chromatographic-mass spectrometric analysis. Chromatographia 23, 574–578.
Ciucanu, I., and Kerek, F. (1984) Rapid and simultaneous methylation of fatty and hydroxy fatty acids for gas-liquid chromatographic analysis. J. Chromatogr. 286, 179–185.
Ciucanu, I., and Costello, C. E. (2003) Elimination of oxidative degradation during the per-O-methylation of carbohydrates. J. Am. Chem. Soc. 125, 16213–16219.
Kang, P., Mechref, Y., Klouckova, I., and Novotny, M.V. (2005) Solid-phase permethylation of glycans for mass-spectrometric analysis. Rapid Commun. Mass Spectrom. 19, 3421–3428.
Huang, Y., Konse, T., Mechref, Y., andNovotny, M. V. (2002) MALDI/MS-compatible β-elimination of O-linked oligosaccharides. Rapid Commun. Mass Spectrom. 16, 1199–1204.
Huang, Y., Mechref, Y., and Novotny, M. V. (2001) Microscale nonreductive release of O-linked glycans for subsequent analysis through MALDI mass spectrometry and capillary electrophoresis. Anal. Chem. 73, 6063–6069.
Mechref, Y., and Novotny, M. V. (1998) Mass spectrometric mapping and sequencing of N-linked oligosaccharides derived from submicrogram amounts of glycoproteins. Anal. Chem. 70, 455–463.
Palm, A., and Novotny, M. V. (2005) A monolithic PNGase F enzyme microreactor enabling glycan mass mapping of glycoproteins by mass spectrometry. Rapid Commun. Mass Spectrom. 19, 1730–1738.
Rosenfeld, J. M. (1999) Solid-phase analytical derivatization: enhancement of sensitivity and selectivity of analysis. J. Chromatogr A 843, 19–27.
Acknowledgments
This work was supported by grants No. GM24349 from the National Institute of General Medical Sciences, U.S. Department of Health and Human Services, and RR018942 from the National Institute of Health through the National Center for Research Resources (NCRR) for the National Center for Glycomics and Glycoproteomics. PK is the recipient of a fellowship from Merck Research laboratory.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2009 Humana Press, a part of Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Mechref, Y., Kang, P., Novotny, M. (2009). Solid-Phase Permethylation for Glycomic Analysis. In: Packer, N.H., Karlsson, N.G. (eds) Glycomics. Methods in Molecular Biology™, vol 534. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-59745-022-5_4
Download citation
DOI: https://doi.org/10.1007/978-1-59745-022-5_4
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-58829-774-7
Online ISBN: 978-1-59745-022-5
eBook Packages: Springer Protocols