Skip to main content

Nonisotopic In Situ Hybridization

Gene Mapping and Cytogenetics

  • Protocol
Immunochemical Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 80))

Abstract

With the advent of nonradioactive probes during the past decade, in situ hybridization has become an immensely valuable tool in the hands of:

  1. 1.

    Developmental biologists and cell biologists for the detection of mRNA in cells and tissue sections (1–7),

  2. 2.

    Virologists for detection of viral DNA and RNA (8), and

  3. 3.

    Molecular cytogeneticists in detecting chromosome aberrations in interphase cells (Interphase Cytogenetics, especially Cancer Genetics, 9–11), sex determination (12,13), and gene mapping by nonisotopic in situ hybridization (NISH, 14,15).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 74.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Heniford, B W., Shum-Siu, A, Leonberger, M., and Hendler, F J (1993) Variation in cellular EGF receptor mRNA expression demonstrated by in situ reverse transcriptase polymerase chain reaction. Nucleic Acids Res 21, 3159–3166

    Article  PubMed  CAS  Google Scholar 

  2. Schmidt, J. E., Suzuki, A, Ueno, N., and Kimehnan D (1995) Localized BMP-4 mediates dorsal/ventral patterning in the early Xenopus embryo Dev Biol 169, 37–50.

    Article  PubMed  CAS  Google Scholar 

  3. Harvey, M B., Leco, K. J., Arcellana-Panlilio, M Y, Zhang, X., Edwards, D. R., and Schultz, G. A. (1995) Proteinase expression in early mouse embryos is regulated by leukaemia inhibitory factor and epidermal growth factor. Development 121, 1005–1014.

    PubMed  CAS  Google Scholar 

  4. Affolter, M., Nellen, D, Nussbaumer, U, and Basler, K (1994) Multiple requirements for the receptor serine/threonine kinase thick veins reveal novel functions of TGF beta homologues during Drosophila embryogenesis. Development 120, 3105–3117

    PubMed  CAS  Google Scholar 

  5. Suzuki, A, Thies, R S, Yamaji, N, Song, J. J., Wozuey, J. M., Murakami, K., and Ueno, N (1994) A truncated bone morphogenetic protein receptor affects dorsal-ventral patterning in the early Xenopus embryo Proc Natl Acad. Sci USA 91, 10,255–10,259

    Article  PubMed  CAS  Google Scholar 

  6. Sassoon, D and Rosenthal, N. (1993) Detection of messenger RNA by in situ hybridization Methods Enzymol 225, 384–404

    Article  PubMed  CAS  Google Scholar 

  7. Pratt, G D. and Kokaia, M. (1994) In situ hybridization and its application to receptor subunit mRNA regulation. (Review) Trends Pharmacol Sci 15, 131–135.

    Article  PubMed  CAS  Google Scholar 

  8. Bettinger, D., Mougin, C, and Lab, M (1994) Rapid detection of cytomegalo-virus-infection by in situ polymerase chain reaction on MRC5 cells inoculated with blood specimens J Virol Methods 49, 59–66

    Article  PubMed  CAS  Google Scholar 

  9. Nuovo, G. J., MacConnell, P. B, Simsir, A., Valea, F, and French, D. L. (1995) Correlation of the in situ detection of polymerase chain reaction-amplified metalloproteinase complementary DNAs and their inhibitors with prognosis in cervical carcinoma. Cancer Res. 55, 267–275.

    PubMed  CAS  Google Scholar 

  10. Anastasi, J, Thangavelu, M., Vardiman, J. W., Hooberman, A L., Bian, M L., Larson, R. A, and Le Beau, M M. (1991) Interphase cytogenetic analysis detects minimal residual disease in a case of acute lymphoblastic leukemia and resolves the question of origin of relapse after allogeneic transplantation. Blood 11, 1087–1091.

    Google Scholar 

  11. Cremer, T., Lichter, P, Borden, J., Ward, D. C., and Manuelidis, I. (1988) Detection of chromosome aberrations in metaphase and interphase tumour cells by in situ hybridization using chromosome specific library probes Hum Genet 80, 235–246.

    Article  PubMed  CAS  Google Scholar 

  12. Delhanty, J. D. A., Griffin, D K., Handyside, A H, Harper, J., Atkinson, G H G, Pieters, M. H. E. C., and Winston, R. M. L. (1993) Detection of aneuploidy and chromosomal mosaicism in human embryos during preimplantation sex determination by fluorescent in situ hybridization (FISH). Hum Mol Genet 2, 1183–1185.

    Article  PubMed  CAS  Google Scholar 

  13. Delhanty, J. D. A. (1994) Preimplantation diagnosis. Prenat Diag 14, 1217–1227

    Article  CAS  Google Scholar 

  14. Bhatt, B, Burns, J, Flannery, D., and McGee, J. O’D. (1988) Direct visualization of single-copy genes on banded metaphase chromosomes by nonisotopic in situ hybridization. Nucleic Acids Res 16, 3951–3961

    Article  PubMed  CAS  Google Scholar 

  15. Garson, J A, van den Berghe, J. A., and Kemshead, J. T. (1987) Novel nonisotopic in situ hybridization technique detects small (1 kb) unique sequences in routinely G-banded human chromosomes, fine mapping of N-MYC and b-NGF genes. Nucleic Acids Res 15, 4761–4770

    Article  PubMed  CAS  Google Scholar 

  16. Lichter, P., Chieh-Ju, C. T., Calls, K, Hermanson, G, Evans, G. A., Housman, D, and Ward, D. C. (1990) High-resolution mapping of human chromosome by in situ hybridization with cosmic clones. Science 247, 64–69

    Article  PubMed  CAS  Google Scholar 

  17. Lawrence, A. B, Singer, R. H, and McNeil, J A. (1990) Interphase and metaphase resolution of different distances within the human dystrophin gene Science 249, 928–932

    Article  PubMed  CAS  Google Scholar 

  18. Parra, I. and Windle, B (1993) High-resolution visual mapping of stretched DNA by fluorescent hybridization. Nature Genet. 5, 17–21.

    Article  PubMed  CAS  Google Scholar 

  19. Bailey, D. M., Carter, N P., de Vos, D., Leversha, M A., Perryman, M. T, and Ferguson-Smith, M. A. (1993) Coincidence painting, a rapid method for cloning region specific DNA sequences. Nucleic Acids Res 21, 5117–5123

    Article  PubMed  CAS  Google Scholar 

  20. Cinti, C., Santa, S., and Maraldi, N. M. (1993) Localization of single-copy gene by PRINS technique Nucleic Acids Res 21, 5799,5800.

    Article  PubMed  CAS  Google Scholar 

  21. Gosden, J. and Lawson, D (1995) Instant PRINS: a rapid method for chromosome identification by detecting repeated sequences in situ Cytogenet Cell Genet 68, 57–60.

    Article  PubMed  CAS  Google Scholar 

  22. Therkelsen, A J., Nielsen, A., Koch, J., Hindjaer, J., and Kølvraa, S. (1995) Staining of human telomeres with primed in situ labeling (PRINS) Cytogenet Cell Genet. 68, 115–118

    Article  PubMed  CAS  Google Scholar 

  23. Sambrook, J., Fritsch, E. F, and Maniatis T (1989) Molecular Cloning: A Laboratory Manual Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  24. Hindkjaer, J., Koch, J, Mogensen, J., Kølvraa, S., and Bolund, L. (1994) Primed in situ (PRINS) labeling of DNA. Methods Mol Biol 33, 95–107.

    PubMed  CAS  Google Scholar 

  25. Waye, J S and Willard, H. F (1986) Structure, organisation, and sequence of alpha satellite DNA from human chromosome 17: evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome. Mol Cell Biol 6, 3156–3165.

    PubMed  CAS  Google Scholar 

  26. Erlich, H. A (ed) (1989) PCR Technology Principles and Applications for DNA Amplification. Stockton Press, New York.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1998 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Bhatt, B., Sahinoglu, T., Stevens, C. (1998). Nonisotopic In Situ Hybridization. In: Pound, J.D. (eds) Immunochemical Protocols. Methods in Molecular Biology™, vol 80. Humana Press. https://doi.org/10.1007/978-1-59259-257-9_41

Download citation

  • DOI: https://doi.org/10.1007/978-1-59259-257-9_41

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-493-8

  • Online ISBN: 978-1-59259-257-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics