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Isolation and Quantification of MicroRNAs from Human Saliva

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Theranostics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2054))

Abstract

Oral premalignant disorders (OPMD) have relatively high malignant transformation rates to Oral Cancers (OC). Oral carcinogenesis is a multistep process that originates as epithelial hyperplasia followed by epithelial dysplasia, leading to fully malignant phenotypes. Early detection can be lifesaving but is currently not possible due to the lack of early diagnostic tools. The current diagnostic methods such as biopsy sampling, tumor tissue staining, and imaging techniques require skilled personnel and are invasive, painful, time-consuming, and expensive. Saliva has gained momentum as the diagnostic fluid of the future due to its noninvasive nature, ease of sampling, multiple samples can be collected with ease and more importantly does not require skilled personnel. The use of saliva in cancer diagnostics is an emerging and an expanding field. MicroRNA (miRNA) play a role in cancer initiation and progression and the expression changes of miRNA have been investigated as a potential biomarker in cancer studies. In this chapter, we describe a robust and cost-effective protocol to isolate and enrich miRNA from saliva samples. Profiling miRNAs in saliva samples can form part of the clinical management of OPMD and OC patients in the future.

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References

  1. Huber MA, Tantiwongkosi B (2014) Oral and oropharyngeal cancer. Med Clin North Am 98(6):1299. https://doi.org/10.1016/j.mcna.2014.08.005

    Article  PubMed  Google Scholar 

  2. Greer RO Jr (2011) Oral manifestations of smokeless tobacco use. Otolaryngol Clin North Am 44(1):31–56, v. https://doi.org/10.1016/j.otc.2010.09.002

    Article  PubMed  Google Scholar 

  3. Sharan RN, Mehrotra R, Choudhury Y, Asotra K (2012) Association of betel nut with carcinogenesis: revisit with a clinical perspective. PLoS One 7(8):e42759. https://doi.org/10.1371/journal.pone.0042759

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. van der Waal I (2009) Potentially malignant disorders of the oral and oropharyngeal mucosa; terminology, classification and present concepts of management. Oral Oncol 45(4–5):317–323. https://doi.org/10.1016/j.oraloncology.2008.05.016

    Article  PubMed  Google Scholar 

  5. van der Waal I (2010) Potentially malignant disorders of the oral and oropharyngeal mucosa; present concepts of management. Oral Oncol 46(6):423–425. https://doi.org/10.1016/j.oraloncology.2010.02.016

    Article  PubMed  Google Scholar 

  6. Yardimci G, Kutlubay Z, Engin B, Tuzun Y (2014) Precancerous lesions of oral mucosa. World J Clin Cases 2(12):866–872. https://doi.org/10.12998/wjcc.v2.i12.866

    Article  PubMed  PubMed Central  Google Scholar 

  7. Siegel R, Ma J, Zou Z, Jemal A (2014) Cancer statistics, 2014. CA Cancer J Clin 64(1):9–29. https://doi.org/10.3322/caac.21208

    Article  PubMed  Google Scholar 

  8. Salazar C, Calvopiña D, Punyadeera C (2014) miRNAs in human papilloma virus associated oral and oropharyngeal squamous cell carcinomas. Expert Rev Mol Diagn 14(8):1033–1040

    Article  CAS  Google Scholar 

  9. Messadi DV (2013) Diagnostic aids for detection of oral precancerous conditions. Int J Oral Sci 5(2):59–65. https://doi.org/10.1038/ijos.2013.24

    Article  PubMed  PubMed Central  Google Scholar 

  10. Gillenwater A, Papadimitrakopoulou V, Richards-Kortum R (2006) Oral premalignancy: new methods of detection and treatment. Curr Oncol Rep 8(2):146–154

    Article  Google Scholar 

  11. Zhang X, Schulz B, Walsh T, Atherton J, Kostner K, Punyadeera C (2017) Saliva: linking oral health with heart failure. Eur J Heart Fail 19(S1):1. https://doi.org/10.1002/ejhf.833

    Article  Google Scholar 

  12. Cheng Y-SL, Rees T, Wright J (2014) A review of research on salivary biomarkers for oral cancer detection. Clin Transl Med 3:3–3. https://doi.org/10.1186/2001-1326-3-3

    Article  PubMed  PubMed Central  Google Scholar 

  13. Kaufman E, Lamster IB (2002) The diagnostic applications of saliva—a review. Crit Rev Oral Biol Med 13(2):197–212

    Article  Google Scholar 

  14. Pfaffe T, Cooper-White J, Beyerlein P, Kostner K, Punyadeera C (2011) Diagnostic potential of saliva: current state and future applications. Clin Chem 57(5):675–687

    Article  CAS  Google Scholar 

  15. Zhang X, Walsh T, Atherton JJ, Kostner K, Schulz B, Punyadeera C (2017) Identification and validation of a salivary protein panel to detect heart failure early. Theranostics 7(18):4350–4358. https://doi.org/10.7150/thno.21727

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Punyadeera C, Dimeski G, Kostner K, Beyerlein P, Cooper-White J (2011) One-step homogeneous C-reactive protein assay for saliva. J Immunol Methods 373(1–2):19–25. https://doi.org/10.1016/j.jim.2011.07.013

    Article  CAS  PubMed  Google Scholar 

  17. Foo JYY, Wan Y, Kostner K, Arivalagan A, Atherton J, Cooper-White J et al (2012) NT-ProBNP levels in saliva and its clinical relevance to heart failure. PLoS One 7(10):e48452. https://doi.org/10.1371/journal.pone.0048452

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Lim Y, Wan Y, Vagenas D, Ovchinnikov DA, Perry CF, Davis MJ et al (2016) Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers. BMC Cancer 16(1):749. https://doi.org/10.1186/s12885-016-2785-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Chai RC, Lim Y, Frazer IH, Wan Y, Perry C, Jones L et al (2016) A pilot study to compare the detection of HPV-16 biomarkers in salivary oral rinses with tumour p16(INK4a) expression in head and neck squamous cell carcinoma patients. BMC Cancer 16:178. https://doi.org/10.1186/s12885-016-2217-1

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Wan Y, Vagenas D, Salazar C, Kenny L, Perry C, Calvopiña D et al (2017) Salivary miRNA panel to detect HPV-positive and HPV-negative head and neck cancer patients. Oncotarget 8(59):99990–100001. https://doi.org/10.18632/oncotarget.21725

    Article  PubMed  PubMed Central  Google Scholar 

  21. Tang KD, Kenny L, Perry C, Frazer I, Punyadeera C (2017) The overexpression of salivary cytokeratins as potential diagnostic biomarkers in head and neck squamous cell carcinomas. Oncotarget 8(42):72272–72280. https://doi.org/10.18632/oncotarget.19731

    Article  PubMed  PubMed Central  Google Scholar 

  22. Zanotti L, Paderno A, Piazza C, Pagan E, Bignotti E, Romani C et al (2017) Epidermal growth factor receptor detection in serum and saliva as a diagnostic and prognostic tool in oral cancer. Laryngoscope 127(11):E408–e414. https://doi.org/10.1002/lary.26797

    Article  CAS  PubMed  Google Scholar 

  23. Nagler RM (2009) Saliva as a tool for oral cancer diagnosis and prognosis. Oral Oncol 45(12):1006–1010. https://doi.org/10.1016/j.oraloncology.2009.07.005

    Article  CAS  PubMed  Google Scholar 

  24. Zahran F, Ghalwash D, Shaker O, Al-Johani K, Scully C (2015) Salivary microRNAs in oral cancer. Oral Dis 21(6):739–747

    Article  CAS  Google Scholar 

  25. Shiiba M, Uzawa K, Tanzawa H (2010) MicroRNAs in head and neck squamous cell carcinoma (HNSCC) and oral squamous cell carcinoma (OSCC). Cancers 2(2):653–669. https://doi.org/10.3390/cancers2020653

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, Peck D et al (2005) MicroRNA expression profiles classify human cancers. Nature 435:834. https://doi.org/10.1038/nature03702. https://www.nature.com/articles/nature03702#supplementary-information

    Article  CAS  Google Scholar 

  27. Volinia S, Calin GA, Liu C-G, Ambs S, Cimmino A, Petrocca F et al (2006) A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci U S A 103(7):2257–2261

    Article  CAS  Google Scholar 

  28. Mitchell PS, Parkin RK, Kroh EM, Fritz BR, Wyman SK, Pogosova-Agadjanyan EL et al (2008) Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A 105(30):10513–10518

    Article  CAS  Google Scholar 

  29. Nagadia R, Pandit P, Coman WB, Cooper-White J, Punyadeera C (2013) miRNAs in head and neck cancer revisited. Cell Oncol 36(1):1–7

    Article  CAS  Google Scholar 

  30. Jansson MD, Lund AH (2012) MicroRNA and cancer. Mol Oncol 6(6):590–610. https://doi.org/10.1016/j.molonc.2012.09.006

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Lin S, Gregory RI (2015) MicroRNA biogenesis pathways in cancer. Nat Rev Cancer 15(6):321

    Article  CAS  Google Scholar 

  32. Peng Y, Croce CM (2016) The role of MicroRNAs in human cancer. Signal Transduct Target Ther 1:15004. https://doi.org/10.1038/sigtrans.2015.4

    Article  PubMed  PubMed Central  Google Scholar 

  33. Sethi N, Wright A, Wood H, Rabbitts P (2014) MicroRNAs and head and neck cancer: reviewing the first decade of research. Eur J Cancer 50(15):2619–2635. https://doi.org/10.1016/j.ejca.2014.07.012

    Article  CAS  PubMed  Google Scholar 

  34. Mohamed R, Campbell J-L, Cooper-White J, Dimeski G, Punyadeera C (2012) The impact of saliva collection and processing methods on CRP, IgE, and Myoglobin immunoassays. Clin Transl Med 1:19–19. https://doi.org/10.1186/2001-1326-1-19

    Article  PubMed  PubMed Central  Google Scholar 

  35. Salazar C, Nagadia R, Pandit P, Cooper-White J, Banerjee N, Dimitrova N et al (2014) A novel saliva-based microRNA biomarker panel to detect head and neck cancers. Cell Oncol 37(5):331–338

    Article  CAS  Google Scholar 

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Acknowledgments

Our work was supported by the Janssen: Pharmaceutical Companies of Johnson & Johnson and Translational Research Institute (TRI) Spore Grant.

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Correspondence to Chamindie Punyadeera .

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Arunachalam, S.R., Tang, K.D., Punyadeera, C. (2019). Isolation and Quantification of MicroRNAs from Human Saliva. In: Batra, J., Srinivasan, S. (eds) Theranostics. Methods in Molecular Biology, vol 2054. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9769-5_6

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  • DOI: https://doi.org/10.1007/978-1-4939-9769-5_6

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9768-8

  • Online ISBN: 978-1-4939-9769-5

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