Skip to main content

Ultrasensitive Quantification of Recombinant Proteins Using AAA-MS

  • Protocol
  • First Online:
Amino Acid Analysis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2030))

  • 2113 Accesses

Abstract

Recombinant proteins are essential components of therapeutic, biotechnological, food, and household products. In some cases, recombinant proteins must be purified and their quantity and/or concentration precisely determined. In this chapter, we describe a protocol for the quantification of purified recombinant proteins. The protocol is based on a microwave-assisted acidic hydrolysis of the target protein followed by high-resolution mass spectrometry (HRMS) analysis of the hydrolytic products. Absolute quantification is obtained by adding controlled amounts of labeled amino acids that serve as standards.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Assenberg R et al (2013) Advances in recombinant protein expression for use in pharmaceutical research. Curr Opin Struct Biol 23(3):393–402

    Article  CAS  Google Scholar 

  2. Bernhard F, Tozawa Y (2013) Cell-free expression—making a mark. Curr Opin Struct Biol 23(3):374–380

    Article  CAS  Google Scholar 

  3. Juturu V, Wu JC (2018) Heterologous protein expression in Pichia pastoris: latest research progress and applications. Chembiochem 19(1):7–21

    Article  CAS  Google Scholar 

  4. Lomonossoff GP, D’Aoust MA (2016) Plant-produced biopharmaceuticals: a case of technical developments driving clinical deployment. Science 353(6305):1237–1240

    Article  CAS  Google Scholar 

  5. Van Cott KE et al (2004) Haemophilic factors produced by transgenic livestock: abundance that can enable alternative therapies worldwide. Haemophilia 10:70–76

    Article  Google Scholar 

  6. Lagasse HAD et al (2017) Recent advances in (therapeutic protein) drug development. F1000Res 6:113

    Article  Google Scholar 

  7. Kapoor S, Rafiq A, Sharma S (2017) Protein engineering and its applications in food industry. Crit Rev Food Sci Nutr 57(11):2321–2329

    Article  CAS  Google Scholar 

  8. Vojcic L et al (2015) Advances in protease engineering for laundry detergents. New Biotechnol 32(6):629–634

    Article  CAS  Google Scholar 

  9. Almo SC et al (2013) Protein production from the structural genomics perspective: achievements and future needs. Curr Opin Struct Biol 23(3):335–344

    Article  CAS  Google Scholar 

  10. Beck A et al (2016) Cutting-edge mass spectrometry methods for the multi-level structural characterization of antibody-drug conjugates. Expert Rev Proteomics 13(2):157–183

    Article  CAS  Google Scholar 

  11. Brun V et al (2007) Isotope-labeled protein standards: toward absolute quantitative proteomics. Mol Cell Proteomics 6(12):2139–2149

    Article  CAS  Google Scholar 

  12. Gilquin B et al (2017) Multiplex and accurate quantification of acute kidney injury biomarker candidates in urine using Protein Standard Absolute Quantification (PSAQ) and targeted proteomics. Talanta 164:77–84

    Article  CAS  Google Scholar 

  13. https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Guidances/ucm073488.pdf

  14. Lowenthal MS et al (2010) Certification of NIST standard reference material 2389a, amino acids in 0.1 mol/L HCl—quantification by ID LC-MS/MS. Anal Bioanal Chem 397(2):511–519

    Article  CAS  Google Scholar 

  15. Fountoulakis M, Lahm HW (1998) Hydrolysis and amino acid composition of proteins. J Chromatogr A 826(2):109–134

    Article  CAS  Google Scholar 

  16. Bordeerat NK et al (2009) Accurate quantitation of standard peptides used for quantitative proteomics. Proteomics 9(15):3939–3944

    Article  CAS  Google Scholar 

  17. Kato M et al (2009) Application of amino acid analysis using hydrophilic interaction liquid chromatography coupled with isotope dilution mass spectrometry for peptide and protein quantification. J Chromatogr B Analyt Technol Biomed Life Sci 877(27):3059–3064

    Article  CAS  Google Scholar 

  18. Mirgorodskaya OA et al (2012) Absolute quantitation of proteins by acid hydrolysis combined with amino acid detection by mass spectrometry. Methods Mol Biol 828:115–120

    Article  CAS  Google Scholar 

  19. Munoz A, Kral R, Schimmel H (2011) Quantification of protein calibrants by amino acid analysis using isotope dilution mass spectrometry. Anal Biochem 408(1):124–131

    Article  CAS  Google Scholar 

  20. Picard G et al (2012) PSAQ standards for accurate MS-based quantification of proteins: from the concept to biomedical applications. J Mass Spectrom 47(10):1353–1363

    Article  CAS  Google Scholar 

  21. Louwagie M et al (2012) Introducing AAA-MS, a rapid and sensitive method for amino acid analysis using isotope dilution and high-resolution mass spectrometry. J Proteome Res 11(7):3929–3936

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Virginie Brun .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Louwagie, M., Kieffer-Jaquinod, S., Brun, V. (2019). Ultrasensitive Quantification of Recombinant Proteins Using AAA-MS. In: Alterman, M. (eds) Amino Acid Analysis. Methods in Molecular Biology, vol 2030. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9639-1_1

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-9639-1_1

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9638-4

  • Online ISBN: 978-1-4939-9639-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics