Abstract
Cyclic adenosine monophosphate (3′,5′-cAMP) is a multifunctional second messenger which controls extremely diverse and physiologically important biochemical pathways. Among its myriad roles, 3′,5′-cAMP functions as an intracellular regulator of lysosomal pH, which is essential for the activity of acidic lysosomal enzymes. Defects in lysosomal acidification are attributed to many diseases like macular degeneration, Parkinson’s, Alzheimer’s, and cystic fibrosis. Strategic re-acidification of defective lysosomes by pharmacological increase of intracellular cAMP offers exciting therapeutic potential in these diseases. Modular assays for accurate assessment of intracellular cAMP and lysosomal pH are a critical component of this research. We describe label-free targeted metabolomics for quantitating intracellular cAMP and integrated assays for measuring lysosomal pH. These hybrid assays offer fast, unbiased information on intracellular cAMP concentrations and lysosomal pH that can be applied to many cell types and putative drug screening strategies.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Daniel PB, Walker WH, Habener JF (1998) Cyclic amp signaling and gene regulation. Annu Rev Nutr 18:353–383
Robinson G, Butcher RW, Sutherland EW (1968) Cyclic AMP. Annu Rev Biochem 37:149–174
Jackson EK (2017) Discovery and roles of 2′,3'-cAMP in biological systems. Handb Exp Pharmacol 238:229–252
Jefferies KC, Cipriano DJ, Forgac M (2008) Function, structure and regulation of the vacuolar (H+)-ATPases. Arch Biochem Biophys 476:33–42
Paunescu TG, Ljubojevic M, Russo LM et al (2010) cAMP stimulates apical V-ATPase accumulation, microvillar elongation, and proton extrusion in kidney collecting duct A-intercalated cells. Am J Physiol Renal Physiol 298:F643–F654
Ballabio A (2016) The awesome lysosome. EMBO Mol Med 8:73–76
Xu H, Ren D (2015) Lysosomal physiology. Annu Rev Physiol 77:57–80
Swanson J (2006) CFTR: helping to acidify macrophage lysosomes. Nat Cell Biol 8:908–909
Di A, Brown ME, Deriy LV et al (2006) CFTR regulates phagosome acidification in macrophages and alters bactericidal activity. Nat Cell Biol 8:933–944
Alzamora R, Thali RF, Gong F et al (2010) PKA regulates vacuolar H+-ATPase localization and activity via direct phosphorylation of the a subunit in kidney cells. J Biol Chem 285:24676–24685
Dames P, Zimmermann B, Schmidt R et al (2006) cAMP regulates plasma membrane vacuolar-type H+-ATPase assembly and activity in blowfly salivary glands. Proc Natl Acad Sci U S A 103:3926–3931
Wiggins SV, Steegborn C, Levin LR et al (2018) Pharmacological modulation of the CO2/HCO3(−)/pH-, calcium-, and ATP-sensing soluble adenylyl cyclase. Pharmacol Ther 190:173–186
Coffey EE, Beckel JM, Laties AM et al (2014) Lysosomal alkalization and dysfunction in human fibroblasts with the Alzheimer's disease-linked presenilin 1 A246E mutation can be reversed with cAMP. Neuroscience 263:111–124
Liu J, Lu W, Reigada D et al (2008) Restoration of lysosomal pH in RPE cells from cultured human and ABCA4(−/−) mice: pharmacologic approaches and functional recovery. Invest Ophthalmol Vis Sci 49:772–780
Loov C, Mitchell CH, Simonsson M et al (2015) Slow degradation in phagocytic astrocytes can be enhanced by lysosomal acidification. Glia 63:1997–2009
Colacurcio DJ, Nixon RA (2016) Disorders of lysosomal acidification-the emerging role of v-ATPase in aging and neurodegenerative disease. Ageing Res Rev 32:75–88
Li M, Mccann JD, Liedtket CM et al (1988) Cyclic AMP-dependent protein kinase opens chloride channels in normal but not cystic fibrosis airway epithelium. Nature 331:358
Majumdar A, Cruz D, Asamoah N et al (2007) Activation of microglia acidifies lysosomes and leads to degradation of Alzheimer amyloid fibrils. Mol Biol Cell 18:1490–1496
Wolfe DM, Lee JH, Kumar A et al (2013) Autophagy failure in Alzheimer's disease and the role of defective lysosomal acidification. Eur J Neurosci 37:1949–1961
Guha S, Liu J, Baltazar G et al (2014) Rescue of compromised lysosomes enhances degradation of photoreceptor outer segments and reduces lipofuscin-like autofluorescence in retinal pigmented epithelial cells. Adv Exp Med Biol 801:105–111
Majumdar A, Chung H, Dolios G et al (2008) Degradation of fibrillar forms of Alzheimer's amyloid beta-peptide by macrophages. Neurobiol Aging 29:707–715
Folts CJ, Scott-Hewitt N, Proschel C et al (2016) Lysosomal re-acidification prevents Lysosphingolipid-induced Lysosomal impairment and cellular toxicity. PLoS Biol 14:e1002583
Liu J, Lu W, Guha S et al (2012) Cystic fibrosis transmembrane conductance regulator contributes to reacidification of alkalinized lysosomes in RPE cells. Am J Physiol Cell Physiol 303:C160–C169
Visentin S, De Nuccio C, Bernardo A et al (2013) The stimulation of adenosine A2A receptors ameliorates the pathological phenotype of fibroblasts from Niemann-pick type C patients. J Neurosci 33:15388–15393
Guha S, Baltazar GC, Tu LA et al (2012) Stimulation of the D5 dopamine receptor acidifies the lysosomal pH of retinal pigmented epithelial cells and decreases accumulation of autofluorescent photoreceptor debris. J Neurochem 122:823–833
Lu W, Gomez NM, Lim JC et al (2018) The P2Y12 receptor antagonist ticagrelor reduces lysosomal pH and autofluorescence in retinal pigmented epithelial cells from the ABCA4(−/−) mouse model of retinal degeneration. Front Pharmacol 9:242
Guha S, Coffey EE, Lu W et al (2014) Approaches for detecting lysosomal alkalinization and impaired degradation in fresh and cultured RPE cells: evidence for a role in retinal degenerations. Exp Eye Res 126:68–76
Barrett AJ, Kirschke H (1981) [41] Cathepsin B, cathepsin H, and cathepsin L. In: Methods in enzymology. Elsevier, Amsterdam, pp 535–561
Corvol P, Eyries M, Soubrier F (2004) In: Barret A, Rawlings N, Woesser J (eds) Handbook of proteolytic enzymes. Academic Press, San Diego, pp 332–349
Harlan FK, Lusk JS, Mohr BM et al (2016) Fluorogenic substrates for visualizing acidic organelle enzyme activities. PLoS One 11:e0156312
Eriksson I, Öllinger K, Appelqvist H (2017) Analysis of lysosomal pH by flow cytometry using FITC-dextran loaded cells. In: Lysosomes: methods and protocols. NY Springer New York Imprint : Humana Press, New York, pp 179–189
Lööv C, Erlandsson A (2017) Lysosomal acidification in cultured astrocytes using nanoparticles. In: Lysosomes: methods and protocols. NY Springer New York Imprint : Humana Press, New York, pp 165–177
Lin HJ, Herman P, Kang JS et al (2001) Fluorescence lifetime characterization of novel low-pH probes. Anal Biochem 294:118–125
Zheng M-H, Hu X, Yang M-Y et al (2015) Ratiometically fluorescent sensing of Zn (II) based on dual-emission of 2-pyridylthiazole derivatives. J Fluoresc 25:1831–1834
Zhu M, Xing P, Zhou Y et al (2018) Lysosome-targeting ratiometric fluorescent pH probes based on long-wavelength BODIPY. J Mater Chem B 6(27):4422–4426
Depedro HM, Urayama P (2009) Using LysoSensor yellow/blue DND-160 to sense acidic pH under high hydrostatic pressures. Anal Biochem 384:359–361
Chinn A, Michkov A, Insel PA et al (2017) Flow cytometry-based quantification of cyclic AMP in primary human neutrophils. FASEB J 31:Abstract 818.6
Gabriel D, Vernier M, Pfeifer MJ et al (2003) High throughput screening technologies for direct cyclic AMP measurement. Assay Drug Dev Technol 1:291–303
Post SR, Ostrom RS, Insel PA (2000) Biochemical methods for detection and measurement of cyclic AMP and adenylyl cyclase activity. Methods Mol Biol 126:363–374
Raspe M, Klarenbeek J, Jalink K (2015) Recording intracellular cAMP levels with EPAC-based FRET sensors by fluorescence lifetime imaging. Methods Mol Biol 1294:13–24
Williams C (2004) cAMP detection methods in HTS: selecting the best from the rest. Nat Rev Drug Discov 3:125–135
Bond AE, Ding S, Williams CM et al (2011) Mass spectrometric fragmentation behaviour of cAMP analogues. Int J Mass Spectrom 304:130–139
Ren J, Mi Z, Stewart NA et al (2009) Identification and quantification of 2′,3'-cAMP release by the kidney. J Pharmacol Exp Ther 328:855–865
Lu W, Bennett BD, Rabinowitz JD (2008) Analytical strategies for LC-MS-based targeted metabolomics. J Chromatogr B Analyt Technol Biomed Life Sci 871:236–242
Banoub JH, Limbach PA (2009) Mass spectrometry of nucleosides and nucleic acids. CRC Press, Boca Raton
Roberts LD, Souza AL, Gerszten RE et al (2012) Targeted metabolomics. Curr Protoc Mol Biol. Chapter 30:Unit 30 32 31–24
Burhenne H, Kaever V (2013) Quantification of cyclic dinucleotides by reversed-phase LC-MS/MS. Methods Mol Biol 1016:27–37
Irie Y, Parsek MR (2014) LC/MS/MS-based quantitative assay for the secondary messenger molecule, c-di-GMP. Methods Mol Biol 1149:271–279
Peifer S, Schneider K, Nurenberg G et al (2012) Quantitation of intracellular purine intermediates in different Corynebacteria using electrospray LC-MS/MS. Anal Bioanal Chem 404:2295–2305
Spangler C, Bohm A, Jenal U et al (2010) A liquid chromatography-coupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate. J Microbiol Methods 81:226–231
Sun G, Yang K, Zhao Z et al (2007) Shotgun metabolomics approach for the analysis of negatively charged water-soluble cellular metabolites from mouse heart tissue. Anal Chem 79:6629–6640
Zhang G, Walker AD, Lin Z et al (2014) Strategies for quantitation of endogenous adenine nucleotides in human plasma using novel ion-pair hydrophilic interaction chromatography coupled with tandem mass spectrometry. J Chromatogr A 1325:129–136
Tsugawa H, Matsuda F (2016) LC/QqQ/MS analysis: widely targeted metabolomics on the basis of multiple reaction monitoring. In: Mass spectrometry-based metabolomics. CRC Press, Boca Raton, pp 148–180
Wei R, Li G, Seymour AB (2014) Multiplexed, quantitative, and targeted metabolite profiling by LC-MS/MRM. In: Mass spectrometry in metabolomics. Springer, Berlin, pp 171–199
Wilson L, Arabshahi A, Simons B et al (2014) Improved high sensitivity analysis of polyphenols and their metabolites by nano-liquid chromatography-mass spectrometry. Arch Biochem Biophys 559:3–11
Yuan M, Breitkopf SB, Yang X et al (2012) A positive/negative ion–switching, targeted mass spectrometry–based metabolomics platform for bodily fluids, cells, and fresh and fixed tissue. Nat Protoc 7:872
Ren J, Mi ZC, Jackson EK (2008) Assessment of nerve stimulation-induced release of purines from mouse kidneys by tandem mass spectrometry. J Pharmacol Exp Ther 325:920–926
Kenar E, Franken H, Forcisi S et al (2014) Automated label-free quantification of metabolites from liquid chromatography-mass spectrometry data. Mol Cell Proteomics 13:348–359
Neilson KA, Ali NA, Muralidharan S et al (2011) Less label, more free: approaches in label-free quantitative mass spectrometry. Proteomics 11:535–553
Strzelecka D, Chmielinski S, Bednarek S et al (2017) Analysis of mononucleotides by tandem mass spectrometry: investigation of fragmentation pathways for phosphate- and ribose-modified nucleotide analogues. Sci Rep 7:8931
Guo B (2012) LC-MS-based analytical strategies for targeted profiling of metabolites/biomarkers in complex systems. Curr Drug Metab 13:1205
Zhu ZJ, Schultz AW, Wang J et al (2013) Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database. Nat Protoc 8:451–460
Beckel JM, Gomez NM, Lu W et al (2018) Stimulation of TLR3 triggers release of lysosomal ATP in astrocytes and epithelial cells that requires TRPML1 channels. Sci Rep 8:5726
Health UDO, Services H (2001) Guidance for industry, bioanalytical method validation. http://www.fda.gov/cder/guidance/index.htm
Moens W, Vokaer A, Kram R (1975) Cyclic AMP and cyclic GMP concentrations in serum- and density-restricted fibroblast cultures. Proc Natl Acad Sci U S A 72:1063–1067
Sasaki T, Lian S, Qi J et al (2014) Aberrant autolysosomal regulation is linked to the induction of embryonic senescence: differential roles of Beclin 1 and p53 in vertebrate Spns1 deficiency. PLoS Genet 10:e1004409
Liu X, Su Y, Tian H et al (2017) Ratiometric fluorescent probe for Lysosomal pH measurement and imaging in living cells using single-wavelength excitation. Anal Chem 89:7038–7045
Wang C, Zhao T, Li Y et al (2017) Investigation of endosome and lysosome biology by ultra pH-sensitive nanoprobes. Adv Drug Deliv Rev 113:87–96
Acknowledgments
The authors gratefully acknowledge Mr. Dipankar Malakar, Sciex(India), for assistance with the data analysis. The program was supported by the Centre for Advanced Research grant from the Indian Council of Medical Research and DBT-Twinning Research Grant, from the Department of Biotechnology, Government of India, to DG.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Maity, C., Ghosh, D., Guha, S. (2019). Assays for Intracellular Cyclic Adenosine Monophosphate (cAMP) and Lysosomal Acidification. In: Bhattacharya, S. (eds) Metabolomics. Methods in Molecular Biology, vol 1996. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9488-5_14
Download citation
DOI: https://doi.org/10.1007/978-1-4939-9488-5_14
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-4939-9487-8
Online ISBN: 978-1-4939-9488-5
eBook Packages: Springer Protocols