Skip to main content

PNA Telomere and Centromere FISH Staining for Accurate Analysis of Radiation-Induced Chromosomal Aberrations

  • Protocol
  • First Online:
Radiation Cytogenetics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1984))

Abstract

Dicentric and centric ring chromosomes are used for radiation-induced damage analysis and biodosimetry after radiation exposure. However, Giemsa stain-based cytogenetic analysis is labor-intense and time-consuming. Moreover, the disadvantage of Giemsa based chromosome analysis is a potential poor reproducibility when researchers are not fully trained for analysis. These problems come from analysis of morphological abnormality of chromosomal aberrations. Locus-specific FISH probes were used to overcome this problem. Centromere probes can visualize centromere locations and help identify dicentric chromosomes and centric rings. Telomere probes help to identify terminal deletion and telomere fusions. Probes were originally designed with a DNA probe but Peptide nucleic acid (PNA) probes took the place of DNA probes. This chapter introduces PNA telomere and centromere FISH staining and accurate analysis of chromosomal aberrations.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Boei JJ, Vermeulen S, Fomina J, Natarajan AT (1998) Detection of incomplete exchanges and interstitial fragments in X-irradiated human lymphocytes using a telomeric PNA probe. Int J Radiat Biol 73(6):599–603

    Article  CAS  Google Scholar 

  2. Moyzis RK, Buckingham JM, Cram LS, Dani M, Deaven LL, Jones MD, Meyne J, Ratliff RL, Wu JR (1988) A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes. Proc Natl Acad Sci U S A 85(18):6622–6626

    Article  CAS  Google Scholar 

  3. Cartwright IM, Genet MD, Kato TA (2012) A simple and rapid fluorescence in situ hybridization microwave protocol for reliable dicentric chromosome analysis. J Radiat Res 54(2):344–348

    Article  Google Scholar 

  4. Fomina J, Darroudi F, Boei JJ, Natarajan AT (2000) Discrimination between complete and incomplete chromosome exchanges in X-irradiated human lymphocytes using FISH with pan-centromeric and chromosome specific DNA probes in combination with telomeric PNA probe. Int J Radiat Biol 76(6):807–813

    Article  CAS  Google Scholar 

  5. Aleixandre C, Miller DA, Mitchell AR, Warburton DA, Gersen SL, Disteche C, Miller OJ (1987) p82H identifies sequences at every human centromere. Hum Genet 77(1):46–50

    Article  CAS  Google Scholar 

  6. Meyne J, Littlefield LG, Moyzis RK (1989) Labeling of human centromeres using an alphoid DNA consensus sequence: application to the scoring of chromosome aberrations. Mutat Res 226(2):75–79

    Article  CAS  Google Scholar 

  7. Mitchell AR, Gosden JR, Miller DA (1985) A cloned sequence, p82H, of the alphoid repeated DNA family found at the centromeres of all human chromosomes. Chromosoma 92(5):369–377

    Article  CAS  Google Scholar 

  8. Masumoto H, Masukata H, Muro Y, Nozaki N, Okazaki T (1989) A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite. J Cell Biol 109(5):1963–1973

    Article  CAS  Google Scholar 

  9. Chen C, Hong YK, Ontiveros SD, Egholm M, Strauss WM (1999) Single base discrimination of CENP-B repeats on mouse and human chromosomes with PNA-FISH. Mamm Genome 10(1):13–18

    Article  CAS  Google Scholar 

  10. Jaco I, Canela A, Vera E, Blasco MA (2008) Centromere mitotic recombination in mammalian cells. J Cell Biol 181(6):885–892

    Article  CAS  Google Scholar 

  11. Shi L, Fujioka K, Sun J, Kinomura A, Inaba T, Ikura T, Ohtaki M, Yoshida M, Kodama Y, Livingston GK et al (2012) A modified system for analyzing ionizing radiation-induced chromosome abnormalities. Radiat Res 177(5):533–538

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ian M. Cartwright .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Cartwright, I.M., Haskins, J.S., Kato, T.A. (2019). PNA Telomere and Centromere FISH Staining for Accurate Analysis of Radiation-Induced Chromosomal Aberrations. In: Kato, T., Wilson, P. (eds) Radiation Cytogenetics. Methods in Molecular Biology, vol 1984. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9432-8_11

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-9432-8_11

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9430-4

  • Online ISBN: 978-1-4939-9432-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics