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Proteomics in Neural Crest Cell Research

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1976))

Abstract

Detailed investigation of the neural crest cell proteome has lingered behind that of the transcriptome due to the challenge of obtaining sufficient starting material for subsequent proteomic investigation. Compounded by the complexity of protein abundance, large number of posttranslational modifications, and the stochastic nature of proteomics approaches, little data so far exists describing the true neural crest cell proteome. However, recent advances in instrument sensitivity and recovery of material during sample preparation have alleviated many of these problems and make proteomics analysis an underutilized tool to study neural crest cell biology. Here we present a quantitative proteomics protocol for deep analysis of both whole proteome and posttranslational modifications and a separate protocol for ultrasensitive proteomic profiling from submicrogram amounts of protein.

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References

  1. Vogel C, Marcotte EM (2012) Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet 13(4):227–232. https://doi.org/10.1038/nrg3185

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Calderon-Celis F, Encinar JR, Sanz-Medel A (2017) Standardization approaches in absolute quantitative proteomics with mass spectrometry. Mass Spectrom Rev. https://doi.org/10.1002/mas.21542

    Article  PubMed  Google Scholar 

  3. Geiger T, Cox J, Ostasiewicz P, Wisniewski JR, Mann M (2010) Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat Methods 7(5):383–385. https://doi.org/10.1038/nmeth.1446

    Article  CAS  PubMed  Google Scholar 

  4. Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J (2014) Ultrasensitive proteome analysis using paramagnetic bead technology. Mol Syst Biol 10:757. https://doi.org/10.15252/msb.20145625

    Article  CAS  PubMed  Google Scholar 

  5. Wilson YM, Richards KL, Ford-Perriss ML, Panthier JJ, Murphy M (2004) Neural crest cell lineage segregation in the mouse neural tube. Development 131(24):6153–6162. https://doi.org/10.1242/dev.01533

    Article  CAS  PubMed  Google Scholar 

  6. Wiszniak S, Kabbara S, Lumb R, Scherer M, Secker G, Harvey N, Kumar S, Schwarz Q (2013) The ubiquitin ligase Nedd4 regulates craniofacial development by promoting cranial neural crest cell survival and stem-cell like properties. Dev Biol 383(2):186–200. https://doi.org/10.1016/j.ydbio.2013.09.024

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Quenten Schwarz .

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McCarthy, P., Schwarz, Q. (2019). Proteomics in Neural Crest Cell Research. In: Schwarz, Q., Wiszniak, S. (eds) Neural Crest Cells. Methods in Molecular Biology, vol 1976. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-9412-0_12

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  • DOI: https://doi.org/10.1007/978-1-4939-9412-0_12

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-9411-3

  • Online ISBN: 978-1-4939-9412-0

  • eBook Packages: Springer Protocols

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