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Analysis of Arginine Metabolism Using LC-MS and Isotopic Labeling

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High-Throughput Metabolomics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1978))

Abstract

Arginine metabolism is linked to several important metabolic processes, and reprogramming of arginine metabolism occurs in various physiological and pathological conditions. Here we describe a method, using a LC-MS-based metabolomics and 15N4-arginine tracing approach, to quantitatively analyze arginine metabolism. This method can reliably quantify the abundance of important intermediates and fluxes of major metabolic reactions in arginine metabolism in a variety of cultured mammalian cell models.

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References

  1. Kelly B, O’Neill LA (2015) Metabolic reprogramming in macrophages and dendritic cells in innate immunity. Cell Res 25(7):771–784. https://doi.org/10.1038/cr.2015.68

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Hesse M, Modolell M, La Flamme AC, Schito M, Fuentes JM, Cheever AW, Pearce EJ, Wynn TA (2001) Differential regulation of nitric oxide synthase-2 and arginase-1 by type 1/type 2 cytokines in vivo: granulomatous pathology is shaped by the pattern of L-arginine metabolism. J Immunol 167(11):6533–6544

    CAS  PubMed  Google Scholar 

  3. Geiger R, Rieckmann JC, Wolf T, Basso C, Feng Y, Fuhrer T, Kogadeeva M, Picotti P, Meissner F, Mann M, Zamboni N, Sallusto F, Lanzavecchia A (2016) L-arginine modulates T cell metabolism and enhances survival and anti-tumor activity. Cell 167(3):829–842.e813. https://doi.org/10.1016/j.cell.2016.09.031

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Dillon BJ, Prieto VG, Curley SA, Ensor CM, Holtsberg FW, Bomalaski JS, Clark MA (2004) Incidence and distribution of argininosuccinate synthetase deficiency in human cancers: a method for identifying cancers sensitive to arginine deprivation. Cancer 100(4):826–833. https://doi.org/10.1002/cncr

    Article  CAS  PubMed  Google Scholar 

  5. McAlpine JA, Lu HT, Wu KC, Knowles SK, Thomson JA (2014) Down-regulation of argininosuccinate synthetase is associated with cisplatin resistance in hepatocellular carcinoma cell lines: implications for PEGylated arginine deiminase combination therapy. BMC Cancer 14:621. https://doi.org/10.1186/1471-2407-14-621

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Ensor CM, Holtsberg FW, Bomalaski JS, Clark MA (2002) Pegylated arginine deiminase (ADI-SS PEG20,000 mw) inhibits human melanomas and hepatocellular carcinomas in vitro and in vivo. Cancer Res 62(19):5443–5450

    CAS  PubMed  Google Scholar 

  7. Shen LJ, Lin WC, Beloussow K, Shen WC (2003) Resistance to the anti-proliferative activity of recombinant arginine deiminase in cell culture correlates with the endogenous enzyme, argininosuccinate synthetase. Cancer Lett 191(2):165–170

    CAS  PubMed  Google Scholar 

  8. Moncada S, Higgs A (1993) The L-arginine-nitric oxide pathway. N Engl J Med 329(27):2002–2012. https://doi.org/10.1056/nejm199312303292706

    Article  CAS  PubMed  Google Scholar 

  9. Zhang C, Hein TW, Wang W, Miller MW, Fossum TW, McDonald MM, Humphrey JD, Kuo L (2004) Upregulation of vascular arginase in hypertension decreases nitric oxide-mediated dilation of coronary arterioles. Hypertension 44(6):935–943. https://doi.org/10.1161/01.HYP.0000146907.82869.f2

    Article  CAS  PubMed  Google Scholar 

  10. Morris CR, Poljakovic M, Lavrisha L, Machado L, Kuypers FA, Morris SM Jr (2004) Decreased arginine bioavailability and increased serum arginase activity in asthma. Am J Respir Crit Care Med 170(2):148–153. https://doi.org/10.1164/rccm.200309-1304OC

    Article  PubMed  Google Scholar 

  11. Antoniewicz MR (2015) Methods and advances in metabolic flux analysis: a mini-review. J Ind Microbiol Biotechnol 42(3):317–325. https://doi.org/10.1007/s10295-015-1585-x

    Article  CAS  PubMed  Google Scholar 

  12. Zamboni N (2011) 13C metabolic flux analysis in complex systems. Curr Opin Biotechnol 22(1):103–108. https://doi.org/10.1016/j.copbio.2010.08.009

    Article  CAS  PubMed  Google Scholar 

  13. Wittmann C, Heinzle E (1999) Mass spectrometry for metabolic flux analysis. Biotechnol Bioeng 62(6):739–750

    CAS  PubMed  Google Scholar 

  14. Bennett BD, Yuan J, Kimball EH, Rabinowitz JD (2008) Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach. Nat Protoc 3(8):1299–1311. https://doi.org/10.1038/nprot.2008.107

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Clasquin MF, Melamud E, Rabinowitz JD (2012) LC-MS data processing with MAVEN: a metabolomic analysis and visualization engine. Curr Protoc Bioinformatics 14:Unit14.11. https://doi.org/10.1002/0471250953.bi1411s37

    Article  PubMed  Google Scholar 

  16. Millard P, Letisse F, Sokol S, Portais JC (2012) IsoCor: correcting MS data in isotope labeling experiments. Bioinformatics 28(9):1294–1296. https://doi.org/10.1093/bioinformatics/bts12

    Article  CAS  PubMed  Google Scholar 

  17. Monticelli LA, Buck MD, Flamar AL, Saenz SA, Tait Wojno ED, Yudanin NA, Osborne LC, Hepworth MR, Tran SV, Rodewald HR, Shah H, Cross JR, Diamond JM, Cantu E, Christie JD, Pearce EL, Artis D (2016) Arginase 1 is an innate lymphoid-cell-intrinsic metabolic checkpoint controlling type 2 inflammation. Nat Immunol 17(6):656–665. https://doi.org/10.1038/ni.3421

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Shin S, Fung SM, Mohan S, Fung HL (2011) Simultaneous bioanalysis of L-arginine, L-citrulline, and dimethylarginines by LC-MS/MS. J Chromatogr B Analyt Technol Biomed Life Sci 879(7–8):467–474. https://doi.org/10.1016/j.jchromb.2011.01.006

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Luo X, Gu X, Li L (2017) Development of a simple and efficient method of harvesting and lysing adherent mammalian cells for chemical isotope labeling LC-MS-based cellular metabolomics. Analytica Chimica Acta. Millard P, Letisse F, Sokol S, Portais JC (2012) IsoCor: correcting MS data in isotope labeling experiments. Bioinformatics 28(9):1294–1296. https://doi.org/10.1093/bioinformatics/bts12

    Article  Google Scholar 

  20. Huege J, Goetze J, Dethloff F, Junker B, Kopka J (2014) Quantification of stable isotope label in metabolites via mass spectrometry. Methods Mol Biol 1056:213–223. https://doi.org/10.1007/978-1-62703-592-7_20

    Article  PubMed  Google Scholar 

  21. Jungreuthmayer C, Neubauer S, Mairinger T, Zanghellini J, Hann S (2016) ICT: isotope correction toolbox. Bioinformatics 32(1):154–156. https://doi.org/10.1093/bioinformatics/btv514

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Jing Fan .

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Seim, G.L., Britt, E.C., Fan, J. (2019). Analysis of Arginine Metabolism Using LC-MS and Isotopic Labeling. In: D'Alessandro, A. (eds) High-Throughput Metabolomics. Methods in Molecular Biology, vol 1978. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9236-2_13

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  • DOI: https://doi.org/10.1007/978-1-4939-9236-2_13

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9235-5

  • Online ISBN: 978-1-4939-9236-2

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