Skip to main content

Detection of ADP-Ribosylation of the Androgen Receptor Using the Recombinant Macrodomain AF1521 from Archaeoglobus fulgidus

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1966))

Abstract

ADP-ribosylation is a posttranslational modification generated by members of the superfamily of ADP-ribosyltransferases, known as the Parp enzymes. Depending on the superfamily member, Parp enzymes can mono- or poly-ADP-ribosylate a protein substrate. Parp superfamily members confer regulation to a variety of biological processes that include cell signaling, DNA repair, transcription, and stress responses. Here, we describe biochemical methods for detection of ADP-ribose conjugated to the androgen receptor (AR) using the archaeal macrodomain, AF1521, from Archaeoglobus fulgidus. The utility of AF1521 is based on its highly selective recognition of ADP-ribose conjugated to protein. AF1521 immobilized on beads can be used to enrich for ADP-ribosylated proteins, which in our application results in recovery of ADP-ribosylated AR from prostate cancer cell extracts. We engineered tandem AF1521 macrodomains and found this improves the recovery of ADP-ribosylated AR under native conditions, and it enabled development of an assay for detection of ADP-ribosylation on blots. Thus, AF1521 can be used to query ADP-ribosylation of protein under both native and denaturing conditions. Our assays should prove useful for understanding how ADP-ribosylation regulates AR function.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Gao W, Bohl CE, Dalton JT (2005) Chemistry and structural biology of androgen receptor. Chem Rev 105:3352–3370. https://doi.org/10.1021/cr020456u

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Bennett NC, Gardiner RA, Hooper JD et al (2010) Molecular cell biology of androgen receptor signalling. Int J Biochem Cell Biol 42:813–827. https://doi.org/10.1016/j.biocel.2009.11.013

    Article  CAS  PubMed  Google Scholar 

  3. Heinlein CA, Chang C (2002) Androgen receptor (AR) coregulators: an overview. Endocr Rev 23:175–200

    Article  CAS  Google Scholar 

  4. Gioeli D, Paschal BM (2012) Post-translational modification of the androgen receptor. Mol Cell Endocrinol 352:70–78. https://doi.org/10.1016/j.mce.2011.07.004

    Article  CAS  PubMed  Google Scholar 

  5. Siegel RL, Miller KD, Ahmedin J (2018) Cancer statistics, 2018. CA Cancer J Clin 68:7–30. https://doi.org/10.3322/caac.21442

    Article  PubMed  Google Scholar 

  6. Balk SP, Knudsen KE (2008) AR, the cell cycle, and prostate cancer. Nucl Recept Signal 6:e001. https://doi.org/10.1621/nrs.06001

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Schreiber V, Dantzer F, Ame J-C, de Murcia G (2006) Poly(ADP-ribose): novel functions for an old molecule. Nat Rev Mol Cell Biol 7:517–528. https://doi.org/10.1038/nrm1963

    Article  CAS  PubMed  Google Scholar 

  8. Gibson BA, Kraus WL (2012) New insights into the molecular and cellular functions of poly(ADP-ribose) and PARPs. Nat Rev Mol Cell Biol 13:411–424. https://doi.org/10.1038/nrm3376

    Article  CAS  PubMed  Google Scholar 

  9. Rouleau M, Patel A, Hendzel MJ et al (2010) PARP inhibition: PARP1 and beyond. Nat Rev Cancer 10:293–301. https://doi.org/10.1038/nrc2812

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Mateo J, Carreira S, Sandhu S et al (2015) DNA-repair defects and olaparib in metastatic prostate cancer. N Engl J Med 373:1697–1708. https://doi.org/10.1056/NEJMoa1506859

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Schiewer MJ, Goodwin JF, Han S et al (2012) Dual roles of PARP-1 promote cancer growth and progression. Cancer Discov 2:1134–1149. https://doi.org/10.1158/2159-8290.CD-12-0120

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Gupte R, Liu Z, Kraus WL (2017) PARPs and ADP-ribosylation: recent advances linking molecular functions to biological outcomes. Genes Dev 31:101–126. https://doi.org/10.1101/gad.291518.116

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Bindesbøll C, Tan S, Bott D et al (2016) TCDD-inducible poly-ADP-ribose polymerase (TIPARP/PARP7) mono-ADP-ribosylates and co-activates liver X receptors. Biochem J 473:899–910. https://doi.org/10.1042/BJ20151077

    Article  CAS  PubMed  Google Scholar 

  14. Allen MD, Buckle AM, Cordell SC et al (2003) The crystal structure of AF1521 a protein from Archaeoglobus fulgidus with homology to the non-histone domain of macroH2A. J Mol Biol 330:503–511. https://doi.org/10.1016/S0022-2836(03)00473-X

    Article  CAS  PubMed  Google Scholar 

  15. Karras GI, Kustatscher G, Buhecha HR et al (2005) The macro domain is an ADP-ribose binding module. EMBO J 24:1911–1920. https://doi.org/10.1038/sj.emboj.7600664

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Till S, Ladurner AG (2009) Sensing NAD metabolites through macro domains. Front Biosci 14:3246–3258

    Article  CAS  Google Scholar 

  17. Dani N, Stilla A, Marchegiani A et al (2009) Combining affinity purification by ADP-ribose-binding macro domains with mass spectrometry to define the mammalian ADP-ribosyl proteome. Proc Natl Acad Sci U S A 106:4243–4248. https://doi.org/10.1073/pnas.0900066106

    Article  PubMed  PubMed Central  Google Scholar 

  18. Gagné J-P, Pic É, Isabelle M et al (2012) Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress. Nucleic Acids Res 40:7788–7805. https://doi.org/10.1093/nar/gks486

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Jungmichel S, Rosenthal F, Altmeyer M et al (2013) Proteome-wide identification of poly(ADP-ribosyl)ation targets in different genotoxic stress responses. Mol Cell 52:272–285. https://doi.org/10.1016/j.molcel.2013.08.026

    Article  CAS  PubMed  Google Scholar 

  20. Martello R, Leutert M, Jungmichel S et al (2016) Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue. Nat Commun 7:12917. https://doi.org/10.1038/ncomms12917

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Bock FJ, Chang P (2016) New directions in poly(ADP-ribose) polymerase biology. FEBS J 283:4017–4031. https://doi.org/10.1111/febs.13737

    Article  CAS  PubMed  Google Scholar 

  22. Matsubara H, Hasegawa S, Fujimura S et al (1970) Studies on poly (adenosine diphosphate ribose) V. Mechanism of hydrolysis of poly(adenosine diphosphate ribose) by snake venom phosphodiesterase. J Biol Chem 245:3606–3611

    CAS  PubMed  Google Scholar 

  23. Kasey J, Katarzyna ZK, Chun-Song Y, Karol S, Aakrosh R, Bryce MP (2018) Genomic analysis of DNA repair genes and androgen signaling in prostate cancer. BMC Cancer 18(1)

    Google Scholar 

Download references

Acknowledgment

This work was supported by NIH/NCI grant R01CA214872 to B.M.P.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Bryce M. Paschal .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Kamata, T. et al. (2019). Detection of ADP-Ribosylation of the Androgen Receptor Using the Recombinant Macrodomain AF1521 from Archaeoglobus fulgidus. In: Badr, M. (eds) Nuclear Receptors. Methods in Molecular Biology, vol 1966. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9195-2_9

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-9195-2_9

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9194-5

  • Online ISBN: 978-1-4939-9195-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics