Abstract
Forward genetic screening is an extremely powerful method for identifying novel genes driving a broad range of phenotypes. This protocol describes the complete process for conducting a forward genetic screen in zebrafish, including mutagenesis with N-ethyl-N-nitrosourea (ENU), mating, phenotypic screening, and genetic mapping.
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References
Haffter P, Granato M, Brand M et al (1996) The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development 123:1–36
Beis D, Bartman T, Jin S-W et al (2005) Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development. Development 132:4193–4204
Smith KA, Lagendijk AK, Courtney AD et al (2011) Transmembrane protein 2 (Tmem2) is required to regionally restrict atrioventricular canal boundary and endocardial cushion development. Development 138:4193–4198
Yu Q, Shen Y, Chatterjee B et al (2004) ENU induced mutations causing congenital cardiovascular anomalies. Development 131:6211–6223
Shah AN, Davey CF, Whitebirch AC et al (2015) Rapid reverse genetic screening using crisPr in zebrafish. Nat Methods 12:535–540
Kelsey L, Flenniken AM, Qu D et al (2013) ENU-induced mutation in the DNA-binding domain of KLF3 reveals important roles for KLF3 in cardiovascular development and function in mice. PLoS Genet 9:e1003612
Moore JL, Rush LM, Breneman C et al (2006) Zebrafish genomic instability mutants and cancer susceptibility. Genetics 174:585–600
Zarbalis K, May SR, Shen Y et al (2004) A focused and efficient genetic screening strategy in the mouse: identification of mutations that disrupt cortical development. PLoS Biol 2:e219
Justice MJ, Noveroske JK, Weber JS et al (1999) Mouse ENU mutagenesis. Hum Mol Genet 8:1955–1963
García-García MJ, Eggenschwiler JT, Caspary T et al (2005) Analysis of mouse embryonic patterning and morphogenesis by forward genetics. Proc Natl Acad Sci U S A 102:5913–5919
Stottmann R, Beier D, Stottmann R et al (2014) ENU mutagenesis in the mouse. In: Current protocols in mouse biology. John Wiley & Sons, Inc., Hoboken, NJ, pp 25–35
Patton EE, Zon LI (2001) The art and design of genetic screens: zebrafish. Nat Rev Genet 2:956–966
Solnica-Krezel L, Schier AF, Driever W (1994) Efficient recovery of ENU-induced mutations from the zebrafish germline. Genetics 136:1401–1420
Hill JT, Demarest BL, Bisgrove BW et al (2013) MMAPPR: mutation mapping analysis pipeline for pooled RNA-seq. Genome Res 23:687–697
Miller AC, Obholzer ND, Shah AN et al (2013) RNA-seq-based mapping and candidate identification of mutations from forward genetic screens. Genome Res 23:679–686
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Hill, J.T. (2019). Identifying Toxicant-Interacting Genes Using Forward Genetic Screening in Zebrafish. In: Hansen, J., Winn, L. (eds) Developmental Toxicology. Methods in Molecular Biology, vol 1965. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9182-2_17
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DOI: https://doi.org/10.1007/978-1-4939-9182-2_17
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Publisher Name: Humana, New York, NY
Print ISBN: 978-1-4939-9181-5
Online ISBN: 978-1-4939-9182-2
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