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Isolation of Zebrafish Balbiani Bodies for Proteomic Analysis

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Book cover Vertebrate Embryogenesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1920))

Abstract

Proteomic characterization of isolated organelles can provide insight into the functional components of the structure and novel targets for further testing. Germplasm in developing oocytes is difficult to isolate for protein identification because not all types of germplasm are stable outside of the cytoplasm. In zebrafish, the Balbiani body forms a proteinaceous aggregate that contains the germplasm and we found is stable outside of the oocyte. Here we present a manual isolation protocol that collects intact Balbiani bodies from stage I zebrafish oocytes. We lysed oocytes by passing them through a syringe, and then used a fine injection needle to wick up Balbiani bodies by capillary action with minimal buffer solution. Using this protocol we collected sufficient material for proteomic analysis of the zebrafish Balbiani body.

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References

  1. Bilinski SM, Jaglarz MK, Tworzydlo W (2017) The pole (germ) plasm in insect oocytes. In: Kloc M (ed) Oocytes, results and problems in cell differentiation. Springer International Publishing, New York, pp 103–126

    Google Scholar 

  2. Aguero T, Kassmer S, Alberio R, Johnson A, King ML (2017) Mechanisms of vertebrate germ cell determination. In: Pelegri F (ed) Vertebrate development, advances in experimental medicine and biology. Springer International Publishing, New York, pp 383–440

    Google Scholar 

  3. Lehman R (2016) Germ plasm biogenesis—an Oskar-centric perspective. Curr Top Dev Biol 116:679–707

    Article  Google Scholar 

  4. Hertig AT (1968) The primary human oocyte: some observation on the fine structure of Balbiani’s vitelline body and the origin of annulate lamellae. Am J Anat 122:107–138

    Article  CAS  Google Scholar 

  5. Bontems F, Stein A, Marlow F, Lyuatey J, Gupta T, Mullins MC (2009) Bucky ball organizes germ plasm assembly in zebrafish. Curr Biol 19:414–422

    Article  CAS  Google Scholar 

  6. Marlow F, Mullins MC (2008) Bucky ball functions in Balbiani body assembly and animal-vegetal polarity in the oocyte and follicle cell layer in zebrafish. Dev Biol 321:40–50

    Article  CAS  Google Scholar 

  7. Escobar-Aguirre M, Elkouby YM, Mullins MC (2017) Localization in oogenesis of maternal regulators of embryonic development. Adv Exp Med Biol 953:173–207

    Article  CAS  Google Scholar 

  8. Dosch R, Wagner DS, Mintzer KA, Runke G, Weimelt AP, Mullins MC (2004) Maternal control of vertebrate development before the midblastula transition: mutants from the zebrafish I. Dev Cell 6:771–780

    Article  CAS  Google Scholar 

  9. Rostagno A, Ghiso J (2010) Isolation and biochemical characterization of amyloid plaques and paired helical filaments. Curr Protoc Cell Biol

    Google Scholar 

  10. Lino L, Cheng D, Wang J, Duong DM, Losik TG, Gearing M et al (2004) Proteomic characterization of postmortem amyloid plaques isolated by laser capture microdissection. J Biol Chem 279:37061–37068

    Article  Google Scholar 

  11. Roher AE, Palmer KC, Chau V, Ball MJ (1988) Isolation and chemical characterization of Alzheimer’s disease paired helical filament cytoskeletons: differentiation from amyloid plaque core protein. J Cell Biol 107:2703–2716

    Article  CAS  Google Scholar 

  12. Iqbal K, Zaidi T, Thompson CH, Perz PA, Wisniewski HM (1984) Alzheimer paired helical filaments: bulk isolation, solubility and protein composition. Acta Neuropathol 62:167–177

    Article  CAS  Google Scholar 

  13. Jain S, Wheeler JR, Walters RW, Agrawal A, Barsic A, Parker R (2016) ATPase-modulated stress granules contain a diverse proteome and substructure. Cell 164:487–498

    Article  CAS  Google Scholar 

  14. Khong A, Jain S, Matheny T, Wheeler JR, Parker R (2018) Isolation of mammalian stress granule cores for RNA-Seq analysis. Methods 137:49–54

    Article  CAS  Google Scholar 

  15. Chang P, Torres J, Lewis RA, Mowry KL, Houliston E, King ML (2004) Localization of RNAs to the mitochondrial cloud in Xenopus oocytes through entrapment and association with endoplasmic reticulum. Mol Biol Cell 15:4669–4681

    Article  CAS  Google Scholar 

  16. Escobar-Aguirre M, Zhang H, Jamieson-Lucy A, Mullins MC (2017) Microtubule-actin crosslinking factor 1 (Macf1) domain function in Balbiani body dissociation and nuclear positioning. PLoS Genet 13:1–29

    Article  Google Scholar 

  17. Butler AM, Aguero T, Newman KM, King ML (2017) Primordial germ cell isolation from Xenopus laevis embryos. In: Buszczak M (ed) Germline stem cells, methods in molecular biology. Springer, New York, pp 115–124

    Chapter  Google Scholar 

  18. Elkouby Y, Mullins M (2017) Methods for the analysis of early oogenesis in Zebrafish. Dev Biol 430:310–324

    Article  CAS  Google Scholar 

  19. Wang XG, Bartfai R, Sleptzova-Freidrich I, Orban L (2007) The timing and extent of “juvenile ovary” phase are highly variable during zebrafish testis differentiation. J Fish Biol 70:33–44

    Article  Google Scholar 

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Correspondence to Mary C. Mullins .

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Jamieson-Lucy, A., Mullins, M.C. (2019). Isolation of Zebrafish Balbiani Bodies for Proteomic Analysis. In: Pelegri, F. (eds) Vertebrate Embryogenesis. Methods in Molecular Biology, vol 1920. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9009-2_17

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  • DOI: https://doi.org/10.1007/978-1-4939-9009-2_17

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9008-5

  • Online ISBN: 978-1-4939-9009-2

  • eBook Packages: Springer Protocols

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