Abstract
The protocol below describes an in silico method for drug repositioning (drug repurposing). The data source is ClinicalTrials.gov, which contains about a quarter of a million clinical studies. Mining such rich and clean clinical summary data could be helpful to many health-related researches. Described here is a method that utilizes serious adverse event data to identify potential new uses of drugs and dietary supplements (repositioning).
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References
Hodos RA, Kidd BA, Shameer K, Readhead BP, Dudley JT (2016) In silico methods for drug repurposing and pharmacology. Wiley Interdiscip Rev Syst Biol Med 8:186–210. https://doi.org/10.1002/wsbm.1337
Mullen J, Cockell SJ, Tipney H, Woollard PM, Wipat A (2016) Mining integrated semantic networks for drug repositioning opportunities. PeerJ 4:e1558. https://doi.org/10.7717/peerj.1558
Coelho ED, Arrais JP, Oliveira JL (2016) Computational discovery of putative leads for drug repositioning through drug-target interaction prediction. PLoS Comput Biol 12:e1005219. https://doi.org/10.1371/journal.pcbi.1005219
Zheng C et al (2015) Large-scale direct targeting for drug repositioning and discovery. Sci Rep 5:11970. https://doi.org/10.1038/srep11970
Su EW, Sanger TM (2017) Systematic drug repositioning through mining adverse event data in ClinicalTrials.gov. PeerJ 5:e3154. https://doi.org/10.7717/peerj.3154
Acknowledgments
This work was supported by Eli Lilly and Company.
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: Drug Repositioning by Mining Adverse Event Data in ClinicalTrials.gov (DOCX 17Â kb)
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Su, E.W. (2019). Drug Repositioning by Mining Adverse Event Data in ClinicalTrials.gov. In: Vanhaelen, Q. (eds) Computational Methods for Drug Repurposing. Methods in Molecular Biology, vol 1903. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8955-3_4
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DOI: https://doi.org/10.1007/978-1-4939-8955-3_4
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Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-8954-6
Online ISBN: 978-1-4939-8955-3
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