Abstract
Linking of sensor molecules (e.g., antibodies) to an AFM tip converts it into a biosensor by which single target molecules (e.g., antigens) can be detected and localized on the sample surface. Moreover, the mechanism of interaction can be studied by force spectroscopy if purified target molecules are linked to an ultra-flat surface, such as mica or silicon (nitride). Rapid imaging of the binding sites and force spectroscopy studies are greatly facilitated if 6–10 nm long polyethylene glycol (PEG) chains are used as flexible tethers between the sensor molecule and the tip. Here, we describe a set of methods by which a variety of proteins, oligonucleotides, or small molecules can be tethered to silicon (nitride) tips or to mica. Methods are included which afford site-specific and oriented coupling of the sensor molecules.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Barattin R, Voyer N (2008) Chemical modifications of AFM tips for the study of molecular recognition events. Chem Commun 2008:1513–1532
Ebner A, Wildling L, Zhu R, Rankl C, Haselgrübler T, Hinterdorfer P, Gruber HJ (2008) Functionalization of probe tips and supports for single-molecule recognition force microscopy. In: Samori B (ed) STM and AFM studies on (bio)molecular systems: unraveling the Nanoworld. Springer, Berlin, pp 29–76
Hinterdorfer P, Baumgartner W, Gruber HJ, Schilcher K, Schindler H (1996) Detection and localization of individual antibody-antigen recognition events by atomic force microscopy. Proc Natl Acad Sci U S A 93:3477–3481
Riener CK, Stroh CM, Ebner A, Klampfl C, Gall AA, Romanin C, Lyubchenko YL, Hinterdorfer P, Gruber HJ (2003) Simple test system for single molecule recognition force microscopy. Anal Chim Acta 479:59–75
Kamruzzahan ASM, Ebner A, Wildling L, Kienberger F, Riener CK, Hahn CD, Pollheimer PD, Winklehner P, Hölzl M, Lackner B, Schörkl DM, Hinterdorfer P, Gruber HJ (2006) Antibody linking to atomic force microscope tips via disulfide bond formation. Bioconjug Chem 17:1473–1481
Stroh CM, Ebner A, Geretschläger M, Freudenthaler G, Kienberger F, Kamruzzahan ASM, Smith-Gill SJ, Gruber HJ, Hinterdorfer P (2004) Simultaneous topography and recognition imaging using force microscopy. Biophys J 87:1981–1990
Stroh C, Wang H, Bash R, Ashcroft B, Nelson J, Gruber H, Lohr D, Lindsay SM, Hinterdorfer P (2004) Single-molecule recognition imaging-microscopy. Proc Natl Acad Sci U S A 101:12503–12507
Ebner A, Kienberger F, Kada G, Stroh CM, Geretschläger M, Kamruzzahan ASM, Wildling L, Johnson WT, Ashcroft B, Nelson J, Lindsay SM, Gruber HJ, Hinterdorfer P (2005) Localization of single avidin-biotin interactions using simultaneous topography and molecular recognition imaging. ChemPhysChem 6:897–900
Chen G, Ning X, Park B, Boons G-J, Xu B (2009) Simple, clickable protocol for atomic force microscopy tip modification and its application for trace ricin detection by recognition imaging. Langmuir 25:2860–2864
Hukkanen E, Wieland J, Gewirth A, Leckband D, Braatz RD (2005) Multiple-bond kinetics from single-molecule pulling experiments: evidence for multiple NCAM bonds. Biophys J 89:3434–3445
Drew ME, Chworos A, Oroudjev E, Hansma H, Yamakoshi Y (2010) A tripod molecular tip for single molecule ligand-receptor force spectroscopy by AFM. Langmuir 26:7117–7125
Wildling L, Unterauer B, Zhu R, Rupprecht A, Haselgrübler T, Rankl C, Ebner A, Vater D, Pollheimer P, Pohl EE, Hinterdorfer P, Gruber HJ (2011) Linking of sensor molecules with amino groups to amino-functionalized AFM tips. Bioconjug Chem 22:1239–1248
Rangl M, Leitner M, Riihimäki T, Lehtonen S, Hytönen VP, Gruber HJ, Kulomaa M, Hinterdorfer P, Ebner A (2014) Investigating the binding behaviour of two avidin-based testosterone binders using molecular recognition force spectroscopy. J Mol Recognit 27:92–97
Ebner A, Hinterdorfer P, Gruber HJ (2007) Comparison of different aminofunctionalization strategies for attachment of single antibodies to AFM cantilevers. Ultramicroscopy 107:922–927
Shlyakhtenko LS, Potaman VN, Sinden RR, Gall AA, Lyubchenko YL (2000) Structure and dynamics of three-way DNA junctions: atomic force microscopy studies. Nucleic Acids Res 28:3472–3477
Wang H, Bash R, Yodh JG, Hager GL, Lohr D, Lindsay SM (2002) Glutaraldehyde modified mica: a new surface for atomic force microscopy of chromatin. Biophys J 83:3619–3625
Baumgartner W, Hinterdorfer P, Ness W, Raab A, Vestweber D, Schindler H, Drenckhahn D (2000) Cadherin interaction probed by atomic force microscopy. Proc Natl Acad Sci U S A 97:4005–4010
Klein DG, Stroh CM, Jensenius H, van Es M, Kamruzzahan ASM, Stamouli A, Gruber HJ, Oosterkamp TH, Hinterdorfer P (2003) Covalent immobilization of single proteins on mica for molecular recognition force microscopy. ChemPhysChem 4:1367–1371
Köhler M, Karner A, Leitner M, Hytönen VP, Kulomaa M, Hinterdorfer P, Ebner A (2014) pH-dependent deformations of the energy landscape of avidin-like proteins investigated by single molecule force spectroscopy. Molecules 19:12531–12546
Kamruzzahan ASM, Kienberger F, Stroh CM, Berg J, Huss R, Ebner A, Zhu R, Rankl C, Gruber HJ, Hinterdorfer P (2004) Imaging morphological details and pathological differences of red blood cells using tapping mode AFM. Biol Chem 385:955–960
Preiner J, Losilla NS, Ebner A, Annibale P, Biscarini F, Garcia R, Hinterdorfer P (2008) Imaging and detection of single molecule recognition events on organic semiconductor surfaces. Nano Lett 9:571–575
Dorner MM, Bassett EW, Beiser SM, Kabat EA, Tanenbaum SW (1967) Studies on human antibodies: V. Amino acid composition of antidextrans of the same and of different specificities from several individuals. J Exp Med 125:823–831
Ratto TV, Langry KC, Rudd RE, Balhorn RL, Allen MJ, McElfresh MW (2004) Force spectroscopy of the double-tethered concanavalin-A mannose bond. Biophys J 86:2430–2437
Ebner A, Wildling L, Kamruzzahan ASM, Rankl C, Wruss J, Hahn CD, Hölzl M, Kienberger F, Blaas D, Hinterdorfer P, Gruber HJ (2007) A new, simple method for linking of antibodies to atomic force microscopy tips. Bioconjug Chem 18:1176–1184
Francius G, Alsteens D, Dupres V, Lebeer S, De Keersmaecker S, Vanderleyden J, Gruber HJ, Dufrene YF (2009) Stretching polysaccharides on live cells using single molecule force spectroscopy. Nat Protoc 4:939–946
Lower BH, Yongsunthon R, Shi L, Wildling L, Gruber HJ, Wigginton NS, Reardon CL, Pinchuk GE, Droubay TC, Boily J-F, Lower SK (2009) Antibody-recognition force microscopy shows that outer membrane cytochromes OmcA and MtrC are expressed on the exterior surface of Shewanella oneidensis MR-1. Appl Environ Microbiol 75:2931–2935
Rankl C, Kienberger F, Wildling L, Wruss J, Gruber HJ, Blaas D, Hinterdorfer P (2008) Multiple receptors involved in human rhinovirus attachment to live cells. Proc Natl Acad Sci U S A 105:17778–17783
Fuhrmann A, Ros R (2010) Single-molecule force spectroscopy: a method for quantitative analysis of ligand–receptor interactions. Nanomedicine 5:657–666
Hegner M, Grange W, Bertoncini P (2004) Measurement of single molecular interactions by dynamic force microscopy. Methods Mol Biol 242:369–381
Lv Z, Roychaudhuri R, Condron MM, Teplow DB, Lyubchenko YL (2013) Mechanism of amyloid beta-protein dimerization determined using single-molecule AFM force spectroscopy. Sci Rep 3:2880
Rangl M, Ebner A, Yamada J, Rankl C, Tampé R, Gruber HJ, Rexach M, Hinterdorfer P (2013) Single-molecule analysis of the recognition forces underlying nucleo-cytoplasmic transport. Angew Chem Int Ed Engl 52:10356–10359
Nimmervoll B, Chtcheglova LA, Juhasz K, Cremades N, Aprile FA, Sonnleitner A, Hinterdorfer P, Vigh L, Preiner J, Balogi Z (2015) Cell surface localised Hsp70 is a cancer specific regulator of clathrin-independent endocytosis. FEBS Lett 589:2747–2753
Oh YJ, Hubauer-Brenner M, Gruber HJ, Cui Y, Traxler L, Siligan C, Park S, Hinterdorfer P (2016) Curli mediate bacterial adhesion to fibronectin via tensile multiple bonds. Sci Rep 6:33909
Lin L, Wang H, Liu Y, Yan H, Lindsay S (2006) Recognition imaging with a DNA aptamer. Biophys J 90:4236–4238
Strunz T, Oroszlan K, Schafer R, Güntherodt HJ (1999) Dynamic force spectroscopy of single DNA molecules. Proc Natl Acad Sci U S A 96:11277–11282
Neundlinger I, Puntheeranurak T, Wildling L, Rankl C, Wang L-X, Gruber HJ, Kinne RKH, Hinterdorfer P (2014) Forces and dynamics of glucose and inhibitor binding to sodium glucose co-transporter SGLT1 studied by single molecule force spectroscopy. J Biol Chem 289:21673–21683
Wruss J, Pollheimer PD, Meindl I, Reichel A, Schulze K, Schöfberger W, Piehler J, Tampé R, Blaas D, Gruber HJ (2009) Conformation of receptor adopted upon interaction with virus revealed by site-specific fluorescence quenchers and FRET analysis. J Am Chem Soc 131:5478–5482
Posch S, Aponte-Santamaría C, Schwarzl R, Karner A, Radtke M, Gräter F, Obser T, König G, Brehm MA, Gruber HJ, Netz RR, Baldauf C, Schneppenheim R, Tampé R, Hinterdorfer P (2017) Mutual a domain interactions in the force sensing protein von Willebrand factor. J Struct Biol 197:57
Riener CK, Kada G, Gruber HJ (2002) Quick measurement of protein sulfhydryls with Ellman’s reagent and with 4,4′-dithiodipyridine. Anal Bioanal Chem 373:266–276
Sander EG, Jencks WP (1968) Equilibria for additions to carbonyl group. J Am Chem Soc 90:6154–6162
Proudnikov D, Mirzabekov A (1996) Chemical methods of DNA and RNA fluorescent labeling. Nucleic Acids Res 24:4535–4542
Wildling L, Hinterdorfer P, Kusche-Vihrog K, Treffner Y, Oberleithner H (2009) Aldosterone receptor sites on plasma membrane of human vascular endothelium detected by a mechanical nanosensor. Pflugers Arch 458:223–230
Hölzl M, Tinazli A, Leitner C, Hahn CD, Lackner B, Tampé R, Gruber HJ (2007) Protein-resistant self-assembled monolayers on gold with latent aldehyde functions. Langmuir 23:5571–5577
Krasnoslobodtsev AV, Shlyakhtenko LS, Lyubchenko YL (2006) Probing interactions within the synaptic DNA-SfiI complex by AFM force spectroscopy. J Mol Biol 365:1407–1416
Ebner A, Marek M, Kaiser K, Kada G, Hahn CD, Lackner B, Gruber HJ (2008) Application of biotin-4-fluorescein in homogeneous fluorescence assays for avidin, streptavidin, and biotin or biotin derivatives. Methods Mol Biol 418:73–88
Gruber H, Wilmsen H, Schurga A, Pilger A, Schindler H (1995) Measurement of intravesicular volumes by salt entrapment. Biochim Biophys Acta 1240:266–276
Burns JA, Butler JC, Moran J, Whitesides GM (1991) Selective reduction of disulfides by tris(2-carboxyethyl)phosphine. J Org Chem 56:2648–2650
Bozna BL, Polzella P, Rankl C, Zhu R, Salio M, Shepherd D, Duman M, Cerundolo V, Hinterdorfer P (2011) Binding strength and dynamics of invariant natural killer cell T cell receptor/CD1d-glycosphingolipid interaction on living cells by single molecule force spectroscopy. J Biol Chem 268:15973–15979
Acknowledgements
This work was supported by the Austrian Science Funds (FWF project 15295), by the Austrian Research Promotion Agency (FFG project 819703 NSI-NABIOS), and by the EU-project Tips4Cells LSHG-CT-2005-512101.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Ebner, A., Wildling, L., Gruber, H.J. (2019). Functionalization of AFM Tips and Supports for Molecular Recognition Force Spectroscopy and Recognition Imaging. In: Santos, N., Carvalho, F. (eds) Atomic Force Microscopy. Methods in Molecular Biology, vol 1886. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8894-5_7
Download citation
DOI: https://doi.org/10.1007/978-1-4939-8894-5_7
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-8893-8
Online ISBN: 978-1-4939-8894-5
eBook Packages: Springer Protocols