Abstract
Forward genetics can provide insight into molecular pathways as has been demonstrated by advances in cell biology from comprehensive genetic studies in simple organisms. Recently, techniques have become available that promise a similar potential for understanding developmental pathways in mammals. Here we describe a genetic forward screening approach for identifying factors involved in X chromosome inactivation that is based on haploid mouse embryonic stem cells. Using a genetically encoded selection system screening of large mutant pools can identify candidate silencing factors with high confidence.
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- ESC:
-
Embryonic stem cell
- PBS:
-
Phosphate buffered saline
- RT:
-
Room temperature
- TX100:
-
Triton X-100
References
Moindrot B, Cerase A, Coker H, Masui O, Grijzenhout A, Pintacuda G, Schermelleh L, Nesterova TB, Brockdorff N (2015) A pooled shRNA screen identifies Rbm15, Spen, and Wtap as factors required for Xist RNA-mediated silencing. Cell Rep 12:562–572
Wutz A, Jaenisch R (2000) A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation. Mol Cell 5:695–705
Forment JV, Herzog M, Coates J, Konopka T, Gapp BV, Nijman SM, Adams DJ, Keane TM, Jackson SP (2017) Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells. Nat Chem Biol 13:12–14
Leeb M, Dietmann S, Paramor M, Niwa H, Smith A (2014) Genetic exploration of the exit from self-renewal using haploid embryonic stem cells. Cell Stem Cell 14:385–393
Monfort A, Di Minin G, Postlmayr A, Freimann R, Arieti F, Thore S, Wutz A (2015) Identification of Spen as a crucial factor for Xist function through forward genetic screening in haploid embryonic stem cells. Cell Rep 12:554–561
Carette JE et al (2009) Haploid genetic screens in human cells identify host factors used by pathogens. Science 326:1231–1235
Savarese F, Flahndorfer K, Jaenisch R, Busslinger M, Wutz A (2006) Hematopoietic precursor cells transiently reestablish permissiveness for X inactivation. Mol Cell Biol 26:7167–7177
Leeb M, Wutz A (2011) Derivation of haploid embryonic stem cells from mouse embryos. Nature 479:131–134
Wutz A, Rasmussen TP, Jaenisch R (2002) Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nat Genet 30:167–174
Kishigami S, Wakayama T (2007) Efficient strontium-induced activation of mouse oocytes in standard culture media by chelating calcium. J Reprod Dev 53:1207–1215
Ying QL, Wray J, Nichols J, Batlle-Morera L, Doble B, Woodgett J, Cohen P, Smith A (2008) The ground state of embryonic stem cell self-renewal. Nature 453:519–523
Blomen VA et al (2015) Gene essentiality and synthetic lethality in haploid human cells. Science 350:1092–1096
Jae LT et al (2013) Deciphering the glycosylome of dystroglycanopathies using haploid screens for Lassa virus entry. Science 340:479–483
Giulio Di Minin, Andreas Postlmayr, Anton Wutz (2018) HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells. PLOS Computational Biology 14 (1):e1005950
Langmead B, Salzberg SL (2012) Fast gapped-read alignment with bowtie 2. Nat Methods 9:357–359
Acknowledgment
This work received support from the Swiss National Science Fond (grants 31003A_152814 and 316030_145026). GDM was supported by an ETH Postdoctoral Fellowship. We are grateful to T. Brummelkamp for reagents and advice for the viral gene trap mutagenesis and insertion identification.
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Monfort, A., Di Minin, G., Wutz, A. (2018). Screening for Factors Involved in X Chromosome Inactivation Using Haploid ESCs. In: Sado, T. (eds) X-Chromosome Inactivation. Methods in Molecular Biology, vol 1861. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-8766-5_1
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DOI: https://doi.org/10.1007/978-1-4939-8766-5_1
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Publisher Name: Humana, New York, NY
Print ISBN: 978-1-4939-8765-8
Online ISBN: 978-1-4939-8766-5
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