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Screening for Factors Involved in X Chromosome Inactivation Using Haploid ESCs

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1861))

Abstract

Forward genetics can provide insight into molecular pathways as has been demonstrated by advances in cell biology from comprehensive genetic studies in simple organisms. Recently, techniques have become available that promise a similar potential for understanding developmental pathways in mammals. Here we describe a genetic forward screening approach for identifying factors involved in X chromosome inactivation that is based on haploid mouse embryonic stem cells. Using a genetically encoded selection system screening of large mutant pools can identify candidate silencing factors with high confidence.

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Abbreviations

ESC:

Embryonic stem cell

PBS:

Phosphate buffered saline

RT:

Room temperature

TX100:

Triton X-100

References

  1. Moindrot B, Cerase A, Coker H, Masui O, Grijzenhout A, Pintacuda G, Schermelleh L, Nesterova TB, Brockdorff N (2015) A pooled shRNA screen identifies Rbm15, Spen, and Wtap as factors required for Xist RNA-mediated silencing. Cell Rep 12:562–572

    Article  CAS  Google Scholar 

  2. Wutz A, Jaenisch R (2000) A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation. Mol Cell 5:695–705

    Article  CAS  Google Scholar 

  3. Forment JV, Herzog M, Coates J, Konopka T, Gapp BV, Nijman SM, Adams DJ, Keane TM, Jackson SP (2017) Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells. Nat Chem Biol 13:12–14

    Article  CAS  Google Scholar 

  4. Leeb M, Dietmann S, Paramor M, Niwa H, Smith A (2014) Genetic exploration of the exit from self-renewal using haploid embryonic stem cells. Cell Stem Cell 14:385–393

    Article  CAS  Google Scholar 

  5. Monfort A, Di Minin G, Postlmayr A, Freimann R, Arieti F, Thore S, Wutz A (2015) Identification of Spen as a crucial factor for Xist function through forward genetic screening in haploid embryonic stem cells. Cell Rep 12:554–561

    Article  CAS  Google Scholar 

  6. Carette JE et al (2009) Haploid genetic screens in human cells identify host factors used by pathogens. Science 326:1231–1235

    Article  CAS  Google Scholar 

  7. Savarese F, Flahndorfer K, Jaenisch R, Busslinger M, Wutz A (2006) Hematopoietic precursor cells transiently reestablish permissiveness for X inactivation. Mol Cell Biol 26:7167–7177

    Article  CAS  Google Scholar 

  8. Leeb M, Wutz A (2011) Derivation of haploid embryonic stem cells from mouse embryos. Nature 479:131–134

    Article  CAS  Google Scholar 

  9. Wutz A, Rasmussen TP, Jaenisch R (2002) Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nat Genet 30:167–174

    Article  CAS  Google Scholar 

  10. Kishigami S, Wakayama T (2007) Efficient strontium-induced activation of mouse oocytes in standard culture media by chelating calcium. J Reprod Dev 53:1207–1215

    Article  CAS  Google Scholar 

  11. Ying QL, Wray J, Nichols J, Batlle-Morera L, Doble B, Woodgett J, Cohen P, Smith A (2008) The ground state of embryonic stem cell self-renewal. Nature 453:519–523

    Article  CAS  Google Scholar 

  12. Blomen VA et al (2015) Gene essentiality and synthetic lethality in haploid human cells. Science 350:1092–1096

    Article  CAS  Google Scholar 

  13. Jae LT et al (2013) Deciphering the glycosylome of dystroglycanopathies using haploid screens for Lassa virus entry. Science 340:479–483

    Article  CAS  Google Scholar 

  14. Giulio Di Minin, Andreas Postlmayr, Anton Wutz (2018) HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells. PLOS Computational Biology 14 (1):e1005950

    Article  Google Scholar 

  15. Langmead B, Salzberg SL (2012) Fast gapped-read alignment with bowtie 2. Nat Methods 9:357–359

    Article  CAS  Google Scholar 

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Acknowledgment

This work received support from the Swiss National Science Fond (grants 31003A_152814 and 316030_145026). GDM was supported by an ETH Postdoctoral Fellowship. We are grateful to T. Brummelkamp for reagents and advice for the viral gene trap mutagenesis and insertion identification.

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Correspondence to Asun Monfort or Anton Wutz .

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Monfort, A., Di Minin, G., Wutz, A. (2018). Screening for Factors Involved in X Chromosome Inactivation Using Haploid ESCs. In: Sado, T. (eds) X-Chromosome Inactivation. Methods in Molecular Biology, vol 1861. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-8766-5_1

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  • DOI: https://doi.org/10.1007/978-1-4939-8766-5_1

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-8765-8

  • Online ISBN: 978-1-4939-8766-5

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