Skip to main content

Probing Endocytosis During the Cell Cycle with Minimal Experimental Perturbation

  • Protocol
  • First Online:
Book cover Clathrin-Mediated Endocytosis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1847))

Abstract

Endocytosis mediates the cellular uptake of nutrients, modulates signaling by regulating levels of cell surface receptors, and is usurped by pathogens during infection. Endocytosis activity is known to vary during the cell cycle, in particular during mitosis. Importantly, different experimental conditions can lead to opposite results and conclusions, thereby emphasizing the need for a careful design of protocols. For example, experiments using serum-starvation, ice-cold steps or using mitotic arrest produced by chemicals widely used to synchronize cells (nocodazole, RO-3306, or S-trityl-L-cysteine) induce a blockage of clathrin-mediated endocytosis during mitosis not observed in unperturbed, dividing cells. In addition, perturbations produced by mRNA interference or dominant-negative mutant overexpression affect endocytosis long before cells are being assayed. Here, we describe simple experimental procedures to assay endocytosis along the cell cycle with minimal perturbations.

The original version of this chapter was revised. A correction to this chapter can be found at https://doi.org/10.1007/978-1-4939-8719-1_19

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 59.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 79.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Change history

  • 24 October 2018

    This book was inadvertently published with the incorrect title as Clathrin-Mediated Endoytosis: Methods and Protocols. This has now been corrected throughout the book to Clathrin-Mediated Endocytosis: Methods and Protocols.

References

  1. Doherty GJ, McMahon HT (2009) Mechanisms of endocytosis. Annu Rev Biochem 78:857–902

    Article  CAS  Google Scholar 

  2. Kirchhausen T, Owen D, Harrison SC (2014) Molecular structure, function, and dynamics of clathrin-mediated membrane traffic. Cold Spring Harb Perspect Biol 6(5):a016725

    Article  Google Scholar 

  3. McMahon HT, Boucrot E (2011) Molecular mechanism and physiological functions of clathrin-mediated endocytosis. Nat Rev Mol Cell Biol 12(8):517–533

    Article  CAS  Google Scholar 

  4. Johannes L, Parton RG, Bassereau P, Mayor S (2015) Building endocytic pits without clathrin. Nat Rev Mol Cell Biol 16(5):311–321

    Article  CAS  Google Scholar 

  5. Maldonado-Baez L, Williamson C, Donaldson JG (2013) Clathrin-independent endocytosis: a cargo-centric view. Exp Cell Res 319(18):2759–2769

    Article  CAS  Google Scholar 

  6. Robinson MS (2015) Forty years of Clathrin-coated vesicles. Traffic 16(12):1210–1238

    Article  CAS  Google Scholar 

  7. Kirchhausen T (2009) Imaging endocytic clathrin structures in living cells. Trends Cell Biol 19(11):596–605

    Article  CAS  Google Scholar 

  8. Mettlen M, Danuser G (2014) Imaging and modeling the dynamics of clathrin-mediated endocytosis. Cold Spring Harb Perspect Biol 6(12):a017038

    Article  Google Scholar 

  9. Huang F, Khvorova A, Marshall W, Sorkin A (2004) Analysis of clathrin-mediated endocytosis of epidermal growth factor receptor by RNA interference. J Biol Chem 279(16):16657–16661

    Article  CAS  Google Scholar 

  10. Motley A, Bright NA, Seaman MN, Robinson MS (2003) Clathrin-mediated endocytosis in AP-2-depleted cells. J Cell Biol 162(5):909–918

    Article  CAS  Google Scholar 

  11. Benmerah A, Bayrou M, Cerf-Bensussan N, Dautry-Varsat A (1999) Inhibition of clathrin-coated pit assembly by an Eps15 mutant. J Cell Sci 112(Pt 9):1303–1311

    CAS  PubMed  Google Scholar 

  12. Ford MG, Pearse BM, Higgins MK, Vallis Y, Owen DJ, Gibson A, Hopkins CR, Evans PR, McMahon HT (2001) Simultaneous binding of PtdIns(4,5)P2 and clathrin by AP180 in the nucleation of clathrin lattices on membranes. Science 291(5506):1051–1055

    Article  CAS  Google Scholar 

  13. Damke H, Baba T, Warnock DE, Schmid SL (1994) Induction of mutant dynamin specifically blocks endocytic coated vesicle formation. J Cell Biol 127(4):915–934

    Article  CAS  Google Scholar 

  14. Marks B, Stowell MH, Vallis Y, Mills IG, Gibson A, Hopkins CR, McMahon HT (2001) GTPase activity of dynamin and resulting conformation change are essential for endocytosis. Nature 410(6825):231–235

    Article  CAS  Google Scholar 

  15. Macia E, Ehrlich M, Massol R, Boucrot E, Brunner C, Kirchhausen T (2006) Dynasore, a cell-permeable inhibitor of dynamin. Dev Cell 10(6):839–850

    Article  CAS  Google Scholar 

  16. von Kleist L, Stahlschmidt W, Bulut H, Gromova K, Puchkov D, Robertson MJ, MacGregor KA, Tomilin N, Pechstein A, Chau N, Chircop M, Sakoff J, von Kries JP, Saenger W, Krausslich HG, Shupliakov O, Robinson PJ, McCluskey A, Haucke V (2011) Role of the clathrin terminal domain in regulating coated pit dynamics revealed by small molecule inhibition. Cell 146(3):471–484

    Article  Google Scholar 

  17. Robinson MS, Sahlender DA, Foster SD (2010) Rapid inactivation of proteins by rapamycin-induced rerouting to mitochondria. Dev Cell 18(2):324–331

    Article  CAS  Google Scholar 

  18. Boucrot E, Saffarian S, Zhang R, Kirchhausen T (2010) Roles of AP-2 in clathrin-mediated endocytosis. PLoS One 5(5):e10597

    Article  Google Scholar 

  19. Settembre C, Di Malta C, Polito VA, Garcia Arencibia M, Vetrini F, Erdin S, Erdin SU, Huynh T, Medina D, Colella P, Sardiello M, Rubinsztein DC, Ballabio A (2011) TFEB links autophagy to lysosomal biogenesis. Science 332(6036):1429–1433

    Article  CAS  Google Scholar 

  20. Aguet F, Upadhyayula S, Gaudin R, Chou YY, Cocucci E, He K, Chen BC, Mosaliganti K, Pasham M, Skillern W, Legant WR, Liu TL, Findlay G, Marino E, Danuser G, Megason S, Betzig E, Kirchhausen T (2016) Membrane dynamics of dividing cells imaged by lattice light-sheet microscopy. Mol Biol Cell 27(22):3418–3435

    Article  CAS  Google Scholar 

  21. Boucrot E, Kirchhausen T (2007) Endosomal recycling controls plasma membrane area during mitosis. Proc Natl Acad Sci U S A 104(19):7939–7944

    Article  CAS  Google Scholar 

  22. Tacheva-Grigorova SK, Santos AJ, Boucrot E, Kirchhausen T (2013) Clathrin-mediated endocytosis persists during unperturbed mitosis. Cell Rep 4(4):659–668

    Article  CAS  Google Scholar 

  23. Coupin GT, Muller CD, Remy-Kristensen A, Kuhry JG (1999) Cell surface membrane homeostasis and intracellular membrane traffic balance in mouse L929 cells. J Cell Sci 112(Pt 14):2431–2440

    CAS  PubMed  Google Scholar 

  24. Coller HA, Sang L, Roberts JM (2006) A new description of cellular quiescence. PLoS Biol 4(3):e83

    Article  Google Scholar 

  25. Boucrot E, Howes MT, Kirchhausen T, Parton RG (2011) Redistribution of caveolae during mitosis. J Cell Sci 124(Pt 12):1965–1972

    Article  CAS  Google Scholar 

  26. McCluskey A, Daniel JA, Hadzic G, Chau N, Clayton EL, Mariana A, Whiting A, Gorgani NN, Lloyd J, Quan A, Moshkanbaryans L, Krishnan S, Perera S, Chircop M, von Kleist L, McGeachie AB, Howes MT, Parton RG, Campbell M, Sakoff JA, Wang X, Sun JY, Robertson MJ, Deane FM, Nguyen TH, Meunier FA, Cousin MA, Robinson PJ (2013) Building a better dynasore: the dyngo compounds potently inhibit dynamin and endocytosis. Traffic 14(12):1272–1289

    Article  CAS  Google Scholar 

  27. Ehrlich M, Boll W, Van Oijen A, Hariharan R, Chandran K, Nibert ML, Kirchhausen T (2004) Endocytosis by random initiation and stabilization of clathrin-coated pits. Cell 118(5):591–605

    Article  CAS  Google Scholar 

  28. Rappoport JZ, Simon SM (2008) A functional GFP fusion for imaging clathrin-mediated endocytosis. Traffic 9(8):1250–1255

    Article  CAS  Google Scholar 

  29. Gaidarov I, Santini F, Warren RA, Keen JH (1999) Spatial control of coated-pit dynamics in living cells. Nat Cell Biol 1(1):1–7

    Article  CAS  Google Scholar 

  30. Merrifield CJ, Feldman ME, Wan L, Almers W (2002) Imaging actin and dynamin recruitment during invagination of single clathrin-coated pits. Nat Cell Biol 4(9):691–698

    Article  CAS  Google Scholar 

  31. Jaqaman K, Loerke D, Mettlen M, Kuwata H, Grinstein S, Schmid SL, Danuser G (2008) Robust single-particle tracking in live-cell time-lapse sequences. Nat Methods 5(8):695–702

    Article  CAS  Google Scholar 

  32. Quan A, McGeachie AB, Keating DJ, van Dam EM, Rusak J, Chau N, Malladi CS, Chen C, McCluskey A, Cousin MA, Robinson PJ (2007) Myristyl trimethyl ammonium bromide and octadecyl trimethyl ammonium bromide are surface-active small molecule dynamin inhibitors that block endocytosis mediated by dynamin I or dynamin II. Mol Pharmacol 72(6):1425–1439

    Article  CAS  Google Scholar 

  33. Hill TA, Gordon CP, McGeachie AB, Venn-Brown B, Odell LR, Chau N, Quan A, Mariana A, Sakoff JA, Chircop M, Robinson PJ, McCluskey A (2009) Inhibition of dynamin mediated endocytosis by the dynoles--synthesis and functional activity of a family of indoles. J Med Chem 52(12):3762–3773

    Article  CAS  Google Scholar 

  34. Robertson MJ, Hadzic G, Ambrus J, Pome DY, Hyde E, Whiting A, Mariana A, von Kleist L, Chau N, Haucke V, Robinson PJ, McCluskey A (2012) The Rhodadyns, a new class of small molecule inhibitors of Dynamin GTPase activity. ACS Med Chem Lett 3(5):352–356

    Article  CAS  Google Scholar 

  35. Gibson AE, Noel RJ, Herlihy JT, Ward WF (1989) Phenylarsine oxide inhibition of endocytosis: effects on asialofetuin internalization. Am J Phys 257(2 Pt 1):C182–C184

    Article  CAS  Google Scholar 

  36. Heuser JE, Anderson RG (1989) Hypertonic media inhibit receptor-mediated endocytosis by blocking clathrin-coated pit formation. J Cell Biol 108(2):389–400

    Article  CAS  Google Scholar 

  37. Larkin JM, Brown MS, Goldstein JL, Anderson RG (1983) Depletion of intracellular potassium arrests coated pit formation and receptor-mediated endocytosis in fibroblasts. Cell 33(1):273–285

    Article  CAS  Google Scholar 

  38. Schlegel R, Dickson RB, Willingham MC, Pastan IH (1982) Amantadine and dansylcadaverine inhibit vesicular stomatitis virus uptake and receptor-mediated endocytosis of alpha 2-macroglobulin. Proc Natl Acad Sci U S A 79(7):2291–2295

    Article  CAS  Google Scholar 

  39. Wang LH, Rothberg KG, Anderson RG (1993) Mis-assembly of clathrin lattices on endosomes reveals a regulatory switch for coated pit formation. J Cell Biol 123(5):1107–1117

    Article  CAS  Google Scholar 

  40. Boucrot E, Ferreira AP, Almeida-Souza L, Debard S, Vallis Y, Howard G, Bertot L, Sauvonnet N, McMahon HT (2015) Endophilin marks and controls a clathrin-independent pathway of endocytosis. Nature 517(7535):460–465

    Article  CAS  Google Scholar 

Download references

Acknowledgments

A.J.M.S. was supported by Fundação para a Ciência e Tecnologia (SFRH/BD/33545/2008), and E.B. was a Biotechnology and Biological Sciences Research Council (BBSRC) David Phillips Research Fellow.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Emmanuel Boucrot .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Santos, A.J.M., Boucrot, E. (2018). Probing Endocytosis During the Cell Cycle with Minimal Experimental Perturbation. In: Swan, L. (eds) Clathrin-Mediated Endocytosis. Methods in Molecular Biology, vol 1847. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8719-1_3

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-8719-1_3

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-8717-7

  • Online ISBN: 978-1-4939-8719-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics