Abstract
Yeast surface display is a versatile platform technology for antibody discovery. Nevertheless, the construction of antibody Fab libraries typically is a tedious multistep process that involves the generation of heavy chain as well as light chain display plasmids in different haploid yeast strains followed by yeast mating. Here, we present a focused one-step Golden Gate cloning approach for the generation of yeast surface display Fab libraries that allows for simultaneous introduction of heavy-chain and light-chain variable regions into one single display vector. Thereby, the overall time as well as the materials needed for library generation can be reduced significantly.
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References
Boder ET, Wittrup KD (1997) Yeast surface display for screening combinatorial polypeptide libraries. Nat Biotechnol 15(6):553–557. https://doi.org/10.1038/nbt0697-553
Krah S, Schroter C, Eller C, Rhiel L, Rasche N, Beck J, Sellmann C, Gunther R, Toleikis L, Hock B, Kolmar H, Becker S (2017) Generation of human bispecific common light chain antibodies by combining animal immunization and yeast display. Protein Eng Des Sel 30(4):291–301. https://doi.org/10.1093/protein/gzw077
Schroter C, Gunther R, Rhiel L, Becker S, Toleikis L, Doerner A, Becker J, Schonemann A, Nasu D, Neuteboom B, Kolmar H, Hock B (2015) A generic approach to engineer antibody pH-switches using combinatorial histidine scanning libraries and yeast display. MAbs 7(1):138–151. https://doi.org/10.4161/19420862.2014.985993
Wang B, Lee CH, Johnson EL, Kluwe CA, Cunningham JC, Tanno H, Crooks RM, Georgiou G, Ellington AD (2016) Discovery of high affinity anti-ricin antibodies by B cell receptor sequencing and by yeast display of combinatorial VH:VL libraries from immunized animals. MAbs 8(6):1035–1044. https://doi.org/10.1080/19420862.2016.1190059
Weaver-Feldhaus JM, Lou J, Coleman JR, Siegel RW, Marks JD, Feldhaus MJ (2004) Yeast mating for combinatorial Fab library generation and surface display. FEBS Lett 564(1–2):24–34. https://doi.org/10.1016/s0014-5793(04)00309-6
Feldhaus MJ, Siegel RW, Opresko LK, Coleman JR, Feldhaus JM, Yeung YA, Cochran JR, Heinzelman P, Colby D, Swers J, Graff C, Wiley HS, Wittrup KD (2003) Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library. Nat Biotechnol 21(2):163–170. https://doi.org/10.1038/nbt785
Zielonka S, Weber N, Becker S, Doerner A, Christmann A, Christmann C, Uth C, Fritz J, Schafer E, Steinmann B, Empting M, Ockelmann P, Lierz M, Kolmar H (2014) Shark attack: high affinity binding proteins derived from shark vNAR domains by stepwise in vitro affinity maturation. J Biotechnol 191:236–245. https://doi.org/10.1016/j.jbiotec.2014.04.023
Konning D, Zielonka S, Sellmann C, Schroter C, Grzeschik J, Becker S, Kolmar H (2016) Isolation of a pH-sensitive IgNAR variable domain from a yeast-displayed, histidine-doped master library. Mar Biotechnol (NY) 18(2):161–167. https://doi.org/10.1007/s10126-016-9690-z
Konning D, Rhiel L, Empting M (2017) Semi-synthetic vNAR libraries screened against therapeutic antibodies primarily deliver anti-idiotypic binders. Sci Rep 7(1):9676. https://doi.org/10.1038/s41598-017-10513-9
Boersma YL, Chao G, Steiner D, Wittrup KD, Pluckthun A (2011) Bispecific designed ankyrin repeat proteins (DARPins) targeting epidermal growth factor receptor inhibit A431 cell proliferation and receptor recycling. J Biol Chem 286(48):41273–41285. https://doi.org/10.1074/jbc.M111.293266
Tasumi S, Velikovsky CA, Xu G, Gai SA, Wittrup KD, Flajnik MF, Mariuzza RA, Pancer Z (2009) High-affinity lamprey VLRA and VLRB monoclonal antibodies. Proc Natl Acad Sci U S A 106(31):12891–12896. https://doi.org/10.1073/pnas.0904443106
Wozniak-Knopp G, Bartl S, Bauer A, Mostageer M, Woisetschlager M, Antes B, Ettl K, Kainer M, Weberhofer G, Wiederkum S, Himmler G, Mudde GC, Ruker F (2010) Introducing antigen-binding sites in structural loops of immunoglobulin constant domains: Fc fragments with engineered HER2/neu-binding sites and antibody properties. Protein Eng Des Sel 23(4):289–297. https://doi.org/10.1093/protein/gzq005
Grzeschik J, Hinz SC, Konning D, Pirzer T, Becker S, Zielonka S, Kolmar H (2017) A simplified procedure for antibody engineering by yeast surface display: coupling display levels and target binding by ribosomal skipping. Biotechnol J 12(2). https://doi.org/10.1002/biot.201600454
Doerner A, Rhiel L, Zielonka S, Kolmar H (2014) Therapeutic antibody engineering by high efficiency cell screening. FEBS Lett 588(2):278–287. https://doi.org/10.1016/j.febslet.2013.11.025
Min WK, Kim SG, Seo JH (2015) Affinity maturation of single-chain variable fragment specific for aflatoxin B(1) using yeast surface display. Food Chem 188:604–611. https://doi.org/10.1016/j.foodchem.2015.04.117
Yu X, Qu L, Bigner DD, Chandramohan V (2017) Selection of novel affinity-matured human chondroitin sulfate proteoglycan 4 antibody fragments by yeast display. Protein Eng Des Sel 30:639–647. https://doi.org/10.1093/protein/gzx038
Kieke MC, Cho BK, Boder ET, Kranz DM, Wittrup KD (1997) Isolation of anti-T cell receptor scFv mutants by yeast surface display. Protein Eng 10(11):1303–1310
Wang XX, Shusta EV (2005) The use of scFv-displaying yeast in mammalian cell surface selections. J Immunol Methods 304(1–2):30–42. https://doi.org/10.1016/j.jim.2005.05.006
Rosowski S, Becker S, Toleikis L, Valldorf B, Grzeschik J, Demir D, Willenbücher I, Gaa R, Kolmar H, Zielonka S, Krah S (2018) A novel one-step approach for the construction of yeast surface display Fab antibody libraries. Microbial Cell Factories 17(1)
Sivelle C, Sierocki R, Ferreira-Pinto K, Simon S, Maillere B, Nozach H (2018) Fab is the most efficient format to express functional antibodies by yeast surface display. mAbs:1-10
Engler C, Kandzia R, Marillonnet S (2008) A one pot, one step, precision cloning method with high throughput capability. PLoS One 3(11):e3647. https://doi.org/10.1371/journal.pone.0003647
Lee JH, Skowron PM, Rutkowska SM, Hong SS, Kim SC (1996) Sequential amplification of cloned DNA as tandem multimers using class-IIS restriction enzymes. Genet Anal 13(6):139–145
Padgett KA, Sorge JA (1996) Creating seamless junctions independent of restriction sites in PCR cloning. Gene 168(1):31–35
Engler C, Gruetzner R, Kandzia R, Marillonnet S (2009) Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes. PLoS One 4(5):e5553. https://doi.org/10.1371/journal.pone.0005553
Wu D, Schandry N, Lahaye T (2017) A modular toolbox for Golden-Gate-based plasmid assembly streamlines generation of Ralstonia solanacearum species complex knockout strains and multi-cassette complementation constructs. Mol Plant Pathol 19:1511–1522. https://doi.org/10.1111/mpp.12632
Engler C, Youles M, Gruetzner R, Ehnert TM, Werner S, Jones JD, Patron NJ, Marillonnet S (2014) A golden gate modular cloning toolbox for plants. ACS Synth Biol 3(11):839–843. https://doi.org/10.1021/sb4001504
Luo Y, Lin L, Bolund L, Sorensen CB (2014) Efficient construction of rAAV-based gene targeting vectors by Golden Gate cloning. BioTechniques 56(5):263–268. https://doi.org/10.2144/000114169
Kiriya K, Tsuyuzaki H, Sato M (2017) Module-based systematic construction of plasmids for episomal gene expression in fission yeast. Gene 637:14–24. https://doi.org/10.1016/j.gene.2017.09.030
Celinska E, Ledesma-Amaro R, Larroude M, Rossignol T, Pauthenier C, Nicaud JM (2017) Golden Gate Assembly system dedicated to complex pathway manipulation in Yarrowia lipolytica. Microb Biotechnol 10(2):450–455. https://doi.org/10.1111/1751-7915.12605
Coren LV, Jain S, Trivett MT, Ohlen C, Ott DE (2015) Production of retroviral constructs for effective transfer and expression of T-cell receptor genes using Golden Gate cloning. BioTechniques 58(3):135–139. https://doi.org/10.2144/000114265
Rakestraw JA, Sazinsky SL, Piatesi A, Antipov E, Wittrup KD (2009) Directed evolution of a secretory leader for the improved expression of heterologous proteins and full-length antibodies in Saccharomyces cerevisiae. Biotechnol Bioeng 103(6):1192–1201. https://doi.org/10.1002/bit.22338
Kugler J, Wilke S, Meier D, Tomszak F, Frenzel A, Schirrmann T, Dubel S, Garritsen H, Hock B, Toleikis L, Schutte M, Hust M (2015) Generation and analysis of the improved human HAL9/10 antibody phage display libraries. BMC Biotechnol 15:10. https://doi.org/10.1186/s12896-015-0125-0
Benatuil L, Perez JM, Belk J, Hsieh CM (2010) An improved yeast transformation method for the generation of very large human antibody libraries. Protein Eng Des Sel 23(4):155–159. https://doi.org/10.1093/protein/gzq002
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Krah, S. et al. (2018). A Streamlined Approach for the Construction of Large Yeast Surface Display Fab Antibody Libraries. In: Nevoltris, D., Chames, P. (eds) Antibody Engineering. Methods in Molecular Biology, vol 1827. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8648-4_8
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DOI: https://doi.org/10.1007/978-1-4939-8648-4_8
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