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Core Statistical Methods for Chemogenomic Data

  • Christin RakersEmail author
Protocol
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Part of the Methods in Molecular Biology book series (MIMB, volume 1825)

Abstract

Chemogenomic modeling involves the construction of algorithmic or statistical models for prediction on new input data and is often based on noisy, multidescriptor data. A deeper understanding of such data through statistical analyses can underpin informed study design and increase information gain from prediction results and model performances. This chapter mediates basic statistical concepts and provides step-by-step instructions to explore and visualize chemogenomic data based on the statistics-centered, open-source software R. Directions on executing essential techniques such as the calculation of correlations, hypothesis testing, and clustering are provided.

Key words

Chemogenomic data Normality Correlation Clustering Feature importance Hypothesis testing 

Notes

Acknowledgments

Support from the Japan Society for the Promotion of Science (JSPS) in conjunction with the Alexander von Humboldt Foundation (AvH) is gratefully acknowledged.

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Graduate School of Pharmaceutical Sciences, Yoshida-shimoadachichoKyoto UniversitySakyo-ku, KyotoJapan
  2. 2.Graduate School of Science Nagoya UniversityNagoyaJapan

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