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Characterization of Self-Assembled Protein Scaffolds from Collagen-Mimetic Peptides

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Protein Scaffolds

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1798))

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Abstract

Collagen-mimetic peptides have been utilized to form structures of different morphology for various biomedical and nanotechnology applications. This chapter describes the characterization of collagen-mimetic peptide self-assembled structures formed by tuning the interactions between peptides. Inclusion of varying hydrophobicity, electrostatic forces, and stereoselectivity was mainly employed in CMP designs discussed herein. The role of these forces can be assessed using multiple characterization techniques. Light scattering techniques haveĀ been employed to study the aggregation kinetics of self-assembled nanostructures and to investigate the net charge distribution of peptides. Spectroscopy techniques like circular dichroism, fluorescence, and absorption spectroscopy haveĀ been utilized to decipher the secondary structures of peptide and binding of the peptides with dyes. Imaging techniques helped in resolving the morphology of the self-assembled structures. Confocal fluorescence microscopy and differential scanning calorimetry helped in indirect assessment of hydrophobicity and X-ray studies to determine the inter-helical spacing between the triple helical peptides of the higher order structures.

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References

  1. Merlea C, Perreta S, Lacoura T et al (2002) Hydroxylated human homotrimeric collagen I in Agrobacterium tumefaciens-mediated transient expression and in transgenic tobacco plant. FEBS Lett 515:114ā€“118

    ArticleĀ  Google ScholarĀ 

  2. Oā€™Leary LER, Fallas JA, Bakota EL et al (2011) Multi-hierarchical self-assembly of a collagen mimetic peptide from triple helix to nanofibre and hydrogel. Nat Chem 3:821ā€“828

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  3. Brodsky B, Persikov AV (2005) Molecular structure of the collagen triple helix. Adv Protein Chem 70:301ā€“339

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  4. Kar K, Amin P, Bryan MA et al (2006) Self-association of collagen triple helix peptides into higher order structures. J Biol Chem 281:33,283ā€“33,290

    ArticleĀ  CASĀ  Google ScholarĀ 

  5. Persikov AV, Ramshaw JAM, Brodsky B (2000) Collagen model peptides: sequence dependence of triple-helix stability. Pept Sci 55:436ā€“450

    ArticleĀ  CASĀ  Google ScholarĀ 

  6. Persikov AV, Brodsky B (2002) Unstable molecules form stable tissues. PNAS 99:1101ā€“1103

    ArticleĀ  CASĀ  PubMedĀ  PubMed CentralĀ  Google ScholarĀ 

  7. Lee CH, Singlaa A, Lee Y (2001) Biomedical applications of collagen. Int J Pharm 221:1ā€“22

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  8. Hartgerink JD, Beniash E, Stupp SI (2001) Self-assembly and mineralization of peptide-amphiphile nanofibers. Science 294:1684ā€“1688

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  9. Jiang T, Xu C, Liu Y et al (2014) Structurally defined nanoscale sheets from self-assembly of collagen-mimetic peptides. J Am Chem Soc 136:4300ā€“4308

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  10. Rele S, Song Y, Apkarian RP et al (2007) D-periodic collagen-mimetic microfibers. J Am Chem Soc 129:14,780ā€“14,787

    ArticleĀ  CASĀ  Google ScholarĀ 

  11. Pires MM, Lee J, Ernenwein D, Chmielewski J (2012) Controlling the morphology of metal-promoted higher ordered assemblies of collagen peptides with varied core lengths. Langmuir 28:1993ā€“1997

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  12. Przybyla DE, Rubert Perez CM, Gleaton J etĀ al (2013) Hierarchical assembly of collagen peptide triple helices into curved disks and metal ion promoted hollow spheres. J Am Chem Soc 135:3418ā€“3422

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  13. Cui H, Webber MJ, Stupp SI (2010) Self-assembly of peptide amphiphiles: from molecules to nanostructures to biomaterials. Biopolymers 94:1ā€“18

    ArticleĀ  CASĀ  PubMedĀ  PubMed CentralĀ  Google ScholarĀ 

  14. Xu F, Li F, Jain V et al (2013) Compositional control of higher order assembly using synthetic collagen peptides. J Am Chem Soc 134:47ā€“50

    ArticleĀ  CASĀ  Google ScholarĀ 

  15. Persikov AV, Ramshaw JAM, Brodsky B (2005) Prediction of collagen stability from amino acid sequence. J Biol Chem 280:19,343ā€“19,349

    ArticleĀ  CASĀ  Google ScholarĀ 

  16. Rainey JK, Goh MC (2004) An interactive triple-helical collagen builder. Bioinformatics 20:2458ā€“2459

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  17. Xu F, Zahid S, Silva T (2011) Computational design of a collagen A:B:C-type heterotrimer. J Am Chem Soc 133:15,260ā€“15,263

    ArticleĀ  CASĀ  Google ScholarĀ 

  18. Xu F, Zhang L, Koder RL (2010) De novo self-assembling collagen heterotrimers using explicit positive and negative design. Biochemistry 49:2307ā€“2316

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  19. Litowski JR, Hodges RS (2002) Designing heterodimeric two-stranded Ī±-helical coiled-coils. J Biol Chem 277:37,272ā€“37,279

    ArticleĀ  CASĀ  Google ScholarĀ 

  20. Vizcarra CL, Mayo SL (2005) Electrostatics in computational protein design. Curr Opin Chem Biol 9:622ā€“626

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  21. Egelman EH, Xu C, Maio FD et al (2015) Structural plasticity of helical nanotubes based on coiled-coil assemblies. Structure 23:280ā€“289

    ArticleĀ  CASĀ  PubMedĀ  PubMed CentralĀ  Google ScholarĀ 

  22. Parmar AS, James JK, Grisham DR et al (2016) Dissecting electrostatic contributions to folding and self-assembly using designed multicomponent peptide systems. J Am Chem Soc 138:4362ā€“4367

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  23. McGuinness K, Khan J, Nanda V (2014) Morphological diversity and polymorphism of self-assembling collagen peptides controlled by length of hydrophobic domains. ACS Nano 8:12,514ā€“12,523

    ArticleĀ  CASĀ  Google ScholarĀ 

  24. Xu F, Khan J, McGuinness K et al (2013) Self-assembly of left and right-handed molecular screws. J Am Chem Soc 135(50):18,762ā€“18,765

    ArticleĀ  CASĀ  Google ScholarĀ 

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Acknowledgments

A.S.P. acknowledges support from Department of Science and Technology (DST-SERB), Indiaā€”SB/FTP/PS-073/2014 (Start-Up Research Grant for Young Scientist) & SB/S2/RJN-140/2014 (Ramanujan Fellowship Award). JL acknowledges support from Department of Science and Technology (DST-SERB), Indiaā€”YSS/2015/000572.

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Correspondence to Avanish Singh Parmar .

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Shukla, D., Lahiri, J., Parmar, A.S. (2018). Characterization of Self-Assembled Protein Scaffolds from Collagen-Mimetic Peptides. In: Udit, A. (eds) Protein Scaffolds. Methods in Molecular Biology, vol 1798. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7893-9_18

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  • DOI: https://doi.org/10.1007/978-1-4939-7893-9_18

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7892-2

  • Online ISBN: 978-1-4939-7893-9

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