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In Utero MRI of Mouse Embryos

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1718))

Abstract

Genetically engineered mouse models are used extensively as models of human development and developmental diseases. Conventional histological approaches are static and two-dimensional, and do not provide a full understanding of the dynamic, spatiotemporal changes in developing mouse embryos. Magnetic resonance imaging (MRI) offers a noninvasive and longitudinal approach for three-dimensional in utero imaging of normal and mutant mouse embryos. In this chapter, we describe MRI approaches that have been developed for imaging the living embryonic mouse brain and vasculature. Details are provided on the animal preparation and setup, MRI equipment, acquisition and reconstruction methods that have been found to be most useful for in utero MRI, including examples of applications to fetal mouse neuroimaging.

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References

  1. International Mouse Knockout Consortium, Collins FS, Rossant J, Wurst W (2007) A mouse for all reasons. Cell 128(1):9–13. https://doi.org/10.1016/j.cell.2006.12.018

    Article  Google Scholar 

  2. Nieman BJ, Wong MD, Henkelman RM (2011) Genes into geometry: imaging for mouse development in 3D. Curr Opin Genet Dev 21(5):638–646. https://doi.org/10.1016/j.gde.2011.08.009

    Article  CAS  PubMed  Google Scholar 

  3. Aristizabal O, Mamou J, Ketterling JA, Turnbull DH (2013) High-throughput, high-frequency 3-D ultrasound for in utero analysis of embryonic mouse brain development. Ultrasound Med Biol 39(12):2321–2332. https://doi.org/10.1016/j.ultrasmedbio.2013.06.015

    Article  PubMed  Google Scholar 

  4. Nieman BJ, Turnbull DH (2010) Ultrasound and magnetic resonance microimaging of mouse development. Methods Enzymol 476:379–400. https://doi.org/10.1016/S0076-6879(10)76021-3

    Article  PubMed  PubMed Central  Google Scholar 

  5. Deans AE, Wadghiri YZ, Berrios-Otero CA, Turnbull DH (2008) Mn enhancement and respiratory gating for in utero MRI of the embryonic mouse central nervous system. Magn Reson Med 59(6):1320–1328. https://doi.org/10.1002/mrm.21609

    Article  PubMed  PubMed Central  Google Scholar 

  6. Wu D, Lei J, Rosenzweig JM, Burd I, Zhang J (2014) In utero localized diffusion MRI of the embryonic mouse brain microstructure and injury. J Magn Reson Imaging 42:717. https://doi.org/10.1002/jmri.24828

    Article  PubMed  PubMed Central  Google Scholar 

  7. Berrios-Otero CA, Nieman BJ, Parasoglou P, Turnbull DH (2012) In utero phenotyping of mouse embryonic vasculature with MRI. Magn Reson Med 67(1):251–257. https://doi.org/10.1002/mrm.22991

    Article  PubMed  Google Scholar 

  8. Nieman BJ, Szulc KU, Turnbull DH (2009) Three-dimensional, in vivo MRI with self-gating and image coregistration in the mouse. Magn Reson Med 61(5):1148–1157. https://doi.org/10.1002/mrm.21945

    Article  PubMed  PubMed Central  Google Scholar 

  9. Parasoglou P, Berrios-Otero CA, Nieman BJ, Turnbull DH (2013) High-resolution MRI of early-stage mouse embryos. NMR Biomed 26(2):224–231. https://doi.org/10.1002/nbm.2843

    Article  PubMed  Google Scholar 

  10. Pauly J, Nishimura D, Macovski A (1989) A linear class of large-tip-angle selective excitation pulses. J Magn Reson 82(3):571–587. https://doi.org/10.1016/0022-2364(89)90219-9

    Google Scholar 

  11. Wu D, Reisinger D, Xu J, Fatemi SA, van Zijl PC, Mori S, Zhang J (2014) Localized diffusion magnetic resonance micro-imaging of the live mouse brain. NeuroImage 91:12–20. https://doi.org/10.1016/j.neuroimage.2014.01.014

    Article  PubMed  PubMed Central  Google Scholar 

  12. Aggarwal M, Mori S, Shimogori T, Blackshaw S, Zhang J (2010) Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain. Magn Reson Med 64(1):249–261. https://doi.org/10.1002/mrm.22426

    Article  PubMed  PubMed Central  Google Scholar 

  13. Wu D, Xu J, McMahon MT, van Zijl PC, Mori S, Northington FJ, Zhang J (2013) In vivo high-resolution diffusion tensor imaging of the mouse brain. NeuroImage 83:18–26. https://doi.org/10.1016/j.neuroimage.2013.06.012

    Article  PubMed  Google Scholar 

  14. Mao J, Mareci TH, Andrew ER (1988) Experimental-study of optimal selective 180-degrees radiofrequency pulses. J Magn Reson 79(1):1–10. https://doi.org/10.1016/0022-2364(88)90317-4

    Google Scholar 

  15. Jones DK, Leemans A (2011) Diffusion tensor imaging. Methods Mol Biol 711:127–144. https://doi.org/10.1007/978-1-61737-992-5_6

    Article  CAS  PubMed  Google Scholar 

  16. Jiang H, van Zijl PC, Kim J, Pearlson GD, Mori S (2006) DtiStudio: resource program for diffusion tensor computation and fiber bundle tracking. Comput Methods Prog Biomed 81(2):106–116. https://doi.org/10.1016/j.cmpb.2005.08.004

    Article  Google Scholar 

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Acknowledgements

We thank all the people, current and past, in the Zhang, Wu and Turnbull labs who have contributed to developing the protocols described in this chapter. This research was supported, in part, by grants from the National Institutes of Health: R01NS038461 and R01HL078665 (DHT); R01NS070909 and R01HD974593 (JZ); R21NS098018 (DW).

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Correspondence to Daniel H. Turnbull .

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Zhang, J., Wu, D., Turnbull, D.H. (2018). In Utero MRI of Mouse Embryos. In: García Martín, M., López Larrubia, P. (eds) Preclinical MRI. Methods in Molecular Biology, vol 1718. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7531-0_17

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  • DOI: https://doi.org/10.1007/978-1-4939-7531-0_17

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7530-3

  • Online ISBN: 978-1-4939-7531-0

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