Skip to main content

Crystallographic Analysis of the CusBA Heavy-Metal Efflux Complex of Escherichia coli

  • Protocol
  • First Online:
  • 1131 Accesses

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1700))

Abstract

Crystallization is one of the most successful techniques used to determine protein structure, especially for membrane proteins. However, the application of this technique is not straightforward and often hampered by the difficulties associated with expression, purification, and crystallization. Here we present our protocol and methodology for crystallizing the CusBA adaptor–transporter complex of Escherichia coli. Using these procedures, we were able to produce the first co-crystal structure of a resistance-nodulation-cell division (RND) transporter in complex with its associated membrane fusion protein.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. White SH (2015) Membrane proteins of known 3D structure. http://blanco.biomol.uci.edu/mpstruc/

  2. Long F, Su CC, Zimmermann MT, Boyken SE, Rajashankar KR, Jernigan RL, Yu EW (2010) Crystal structures of the CusA efflux pump suggest methionine-mediated metal transport. Nature 467:484–488

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Su CC, Yang F, Long F, Reyon D, Routh MD, Kuo DW, Mokhtari AK, Van Ornam JD, Rabe KL, Hoy JA, Lee YJ, Rajashankar KR, Yu EW (2009) Crystal structure of the membrane fusion protein CusB from Escherichia coli. J Mol Biol 393:342–355

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Lei HT, Bolla JR, Bishop NR, Su CC, Yu EW (2014) Crystal structures of CusC review conformational changes accompanying folding and transmembrane channel formation. J Mol Biol 426:403–411

    Article  CAS  PubMed  Google Scholar 

  5. Kulathila R, Kulathila R, Indic M, van den Berg B (2011) Crystal structure of Escherichia coli CusC, the outer membrane component of a heavy metal efflux pump. PLoS One 6:e15610

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Su CC, Long F, Zimmermann MT, Rajashankar KR, Jernigan RL, Yu EW (2011) Crystal structure of the CusBA heavy-metal efflux complex of Escherichia coli. Nature 470:558–563

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Su CC, Long F, Lei HT, Bolla JR, Do SV, Rajashankar KR, Yu EW (2012) Charged amino acids (R83, E567, D617, E625, R669, and K678) of CusA are required for metal ion transport in the Cus efflux system. J Mol Biol 422:429–441

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Pope B, Kent HM (1996) High efficiency 5 min transformation of Escherichia coli. Nucleic Acids Res 43:536–537

    Article  Google Scholar 

  9. McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ (2007) Phaser crystallographic software. J Appl Crystallogr 40:658–674

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Terwilliger TC (2001) Maximum-likelihood density modification using pattern recognition of structural motifs. Acta Crystallogr D 57:1755–1762

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Emsley P, Cowtan K (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D 60:2126–2132

    Article  PubMed  Google Scholar 

  12. Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC (2002) PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr 58:1948–1954

    Google Scholar 

Download references

Acknowledgements

This work was supported by an NIH grant R01AI114629 to E.W.Y.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Edward W. Yu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Science+Business Media LLC

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Delmar, J.A., Yu, E.W. (2018). Crystallographic Analysis of the CusBA Heavy-Metal Efflux Complex of Escherichia coli . In: Yamaguchi, A., Nishino, K. (eds) Bacterial Multidrug Exporters. Methods in Molecular Biology, vol 1700. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7454-2_4

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-7454-2_4

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7452-8

  • Online ISBN: 978-1-4939-7454-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics