Abstract
The unfolded protein response (UPR) is a highly regulated signaling pathway that is largely conserved across eukaryotes. It is essential for cell homeostasis under environmental and physiological conditions that perturb the protein folding in the endoplasmic reticulum (ER). Arabidopsis is one of the outstanding multicellular model systems in which to investigate the UPR. Here, we described a protocol to induce the UPR in plants, specifically arabidopsis, and to estimate their ability to cope with ER stress through the quantification of physiological parameters.
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References
Chen Y, Brandizzi F (2013) IRE1: ER stress sensor and cell fate executor. Trends Cell Biol 23:547–555
Liu J-X, Howell SH (2016) Managing the protein folding demands in the endoplasmic reticulum of plants. New Phytol. doi:10.1111/nph.13915
Ruberti C, Brandizzi F (2014) Conserved and plant-unique strategies for overcoming endoplasmic reticulum stress. Front Plant Sci 5:69
Hetz C (2012) The unfolded protein response: controlling cell fate decisions under ER stress and beyond. Nat Rev Mol Cell Biol 13:89–102
Chen Y, Brandizzi F (2012) AtIRE1A/AtIRE1B and AGB1 independently control two essential unfolded protein response pathways in Arabidopsis. Plant J Cell Mol Biol 69:266–277
Mishiba K et al (2013) Defects in IRE1 enhance cell death and fail to degrade mRNAs encoding secretory pathway proteins in the Arabidopsis unfolded protein response. Proc Natl Acad Sci U S A 110:5713–5718
Liu J-X, Srivastava R, Che P, Howell SH (2007) An endoplasmic reticulum stress response in Arabidopsis is mediated by proteolytic processing and nuclear relocation of a membrane-associated transcription factor, bZIP28. Plant Cell 19:4111–4119
Iwata Y, Fedoroff NV, Koizumi N (2008) Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response. Plant Cell 20:3107–3121
Ruberti C, Kim S-J, Stefano G, Brandizzi F (2015) Unfolded protein response in plants: one master, many questions. Curr Opin Plant Biol 27:59–66
Chen Y, Brandizzi F (2013) Analysis of unfolded protein response in Arabidopsis. Methods Mol Biol 1043:73–80
Yang Z-T et al (2014) The membrane-associated transcription factor NAC089 controls ER-stress-induced programmed cell death in plants. PLoS Genet 10(3):e1004243
Sun L et al (2013) The lumen-facing domain is important for the biological function and organelle-to-organelle movement of bZIP28 during ER stress in Arabidopsis. Mol Plant 6:1605–1615
Ritchie RJ (2006) Consistent sets of spectrophotometric chlorophyll equations for acetone, methanol and ethanol solvents. Photosynth Res 89:27–41
Ni Z, Kim E-D, Chen ZJ (2009) Chlorophyll and starch assays. Available at: http://dx.doi.org/10.1038/nprot.2009.12
Deng Y, Srivastava R, Howell SH (2013) Protein kinase and ribonuclease domains of IRE1 confer stress tolerance, vegetative growth, and reproductive development in Arabidopsis. Proc Natl Acad Sci U S A 110:19633–19638
Acknowledgements
This study was primarily supported by National Institutes of Health (GM101038) with contributing support from the Chemical Sciences, Geosciences and Biosciences Division, Office of Basic Energy Sciences, Office of Science, U.S. Department of Energy (award number DE-FG02-91ER20021), and AgBioResearch.
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Ruberti, C., Brandizzi, F. (2018). Unfolded Protein Response in Arabidopsis. In: Hawes, C., Kriechbaumer, V. (eds) The Plant Endoplasmic Reticulum . Methods in Molecular Biology, vol 1691. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7389-7_18
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DOI: https://doi.org/10.1007/978-1-4939-7389-7_18
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Online ISBN: 978-1-4939-7389-7
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