Abstract
Protein N-glycosylation is an essential posttranslational modification which is initiated in the endoplasmic reticulum. In plants, the N-glycans play a pivotal role for protein folding and quality control. Through the interaction of glycan processing and binding reactions mediated by ER-resident glycosidases and specific carbohydrate binding proteins, the N-glycans contribute to the adoption of a native protein conformation. Properly folded glycoproteins are released from these processes and allowed to continue their transit to the Golgi where further processing and maturation of N-glycans leads to the formation of more complex structures with different functions. Incompletely folded glycoproteins are removed from the ER by a highly conserved degradation process to prevent the accumulation or secretion of misfolded proteins and maintain ER homeostasis. Here, we describe methods to analyze the N-glycosylation status and the glycan-dependent ER-associated degradation process in plants.
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References
Xu C, Ng DT (2015) O-mannosylation: the other glycan player of ER quality control. Semin Cell Dev Biol 41:129–134
Gill DJ, Clausen H, Bard F (2011) Location, location, location: new insights into O-GalNAc protein glycosylation. Trends Cell Biol 21(3):149–158
Saito F, Suyama A, Oka T, Yoko-O T, Matsuoka K, Jigami Y, Shimma YI (2014) Identification of novel peptidyl serine α-galactosyltransferase gene family in plants. J Biol Chem 289:20405–20420
Strasser R (2016) Plant protein glycosylation. Glycobiology 26:926–939
Aebi M (2013) N-linked protein glycosylation in the ER. Biochim Biophys Acta 1833:2430–2437
Aebi M, Bernasconi R, Clerc S, Molinari M (2010) N-glycan structures: recognition and processing in the ER. Trends Biochem Sci 35:74–82
Kang J, Frank J, Kang C, Kajiura H, Vikram M, Ueda A, Kim S, Bahk J, Triplett B, Fujiyama K, Lee S, von Schaewen A, Koiwa H (2008) Salt tolerance of Arabidopsis thaliana requires maturation of N-glycosylated proteins in the Golgi apparatus. Proc Natl Acad Sci U S A 105:5933–5938
Fanata WI, Lee KH, Son BH, Yoo JY, Harmoko R, Ko KS, Ramasamy NK, Kim KH, Oh DB, Jung HS, Kim JY, Lee SY, Lee KO (2013) N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa. Plant J 73:966–979
Harmoko R, Yoo JY, Ko KS, Ramasamy NK, Hwang BY, Lee EJ, Kim HS, Lee KJ, Oh DB, Kim DY, Lee S, Li Y, Lee SY, Lee KO (2016) N-glycan containing a core α1,3-fucose residue is required for basipetal auxin transport and gravitropic response in rice (Oryza sativa). New Phytol 212:108–122
Lehle L, Strahl S, Tanner W (2006) Protein glycosylation, conserved from yeast to man: a model organism helps elucidate congenital human diseases. Angew Chem Int Ed Engl 45:6802–6818
Farid A, Pabst M, Schoberer J, Altmann F, Glössl J, Strasser R (2011) Arabidopsis thaliana alpha1,2-glucosyltransferase (ALG10) is required for efficient N-glycosylation and leaf growth. Plant J 68:314–325
Kelleher D, Gilmore R (2006) An evolving view of the eukaryotic oligosaccharyltransferase. Glycobiology 16:47R–62R
Cherepanova N, Shrimal S, Gilmore R (2016) N-linked glycosylation and homeostasis of the endoplasmic reticulum. Curr Opin Cell Biol 41:57–65
Ruiz-Canada C, Kelleher DJ, Gilmore R (2009) Cotranslational and posttranslational N-glycosylation of polypeptides by distinct mammalian OST isoforms. Cell 136:272–283
Koiwa H, Li F, McCully M, Mendoza I, Koizumi N, Manabe Y, Nakagawa Y, Zhu J, Rus A, Pardo J, Bressan R, Hasegawa P (2003) The STT3a subunit isoform of the Arabidopsis oligosaccharyltransferase controls adaptive responses to salt/osmotic stress. Plant Cell 15:2273–2284
Nekrasov V, Li J, Batoux M, Roux M, Chu Z, Lacombe S, Rougon A, Bittel P, Kiss-Papp M, Chinchilla D, van Esse H, Jorda L, Schwessinger B, Nicaise V, Thomma B, Molina A, Jones J, Zipfel C (2009) Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity. EMBO J 28:3428–3438
Saijo Y, Tintor N, Lu X, Rauf P, Pajerowska-Mukhtar K, Häweker H, Dong X, Robatzek S, Schulze-Lefert P (2009) Receptor quality control in the endoplasmic reticulum for plant innate immunity. EMBO J 28:3439–3449
Lerouxel O, Mouille G, Andème-Onzighi C, Bruyant M, Séveno M, Loutelier-Bourhis C, Driouich A, Höfte H, Lerouge P (2005) Mutants in DEFECTIVE GLYCOSYLATION, an Arabidopsis homolog of an oligosaccharyltransferase complex subunit, show protein underglycosylation and defects in cell differentiation and growth. Plant J 42:455–468
Farid A, Malinovsky FG, Veit C, Schoberer J, Zipfel C, Strasser R (2013) Specialized roles of the conserved subunit OST3/6 of the oligosaccharyltransferase complex in innate immunity and tolerance to abiotic stresses. Plant Physiol 162:24–38
Müller LM, Lindner H, Pires ND, Gagliardini V, Grossniklaus U (2016) A subunit of the oligosaccharyltransferase complex is required for interspecific gametophyte recognition in Arabidopsis. Nat Commun 7:10826
Caramelo JJ, Parodi AJ (2015) A sweet code for glycoprotein folding. FEBS Lett 589:3379–3387
Liebminger E, Hüttner S, Vavra U, Fischl R, Schoberer J, Grass J, Blaukopf C, Seifert G, Altmann F, Mach L, Strasser R (2009) Class I alpha-mannosidases are required for N-glycan processing and root development in Arabidopsis thaliana. Plant Cell 21:3850–3867
Vembar S, Brodsky J (2008) One step at a time: endoplasmic reticulum-associated degradation. Nat Rev Mol Cell Biol 9:944–957
Hüttner S, Veit C, Vavra U, Schoberer J, Liebminger E, Maresch D, Grass J, Altmann F, Mach L, Strasser R (2014) Arabidopsis class I α-mannosidases MNS4 and MNS5 are involved in endoplasmic reticulum-associated degradation of misfolded glycoproteins. Plant Cell 26:1712–1728
Liu Y, Li J (2014) Endoplasmic reticulum-mediated protein quality control in Arabidopsis. Front Plant Sci 5:162
Hüttner S, Veit C, Schoberer J, Grass J, Strasser R (2012) Unraveling the function of Arabidopsis thaliana OS9 in the endoplasmic reticulum-associated degradation of glycoproteins. Plant Mol Biol 79:21–33
Hamilton CM (1997) A binary-BAC system for plant transformation with high-molecular-weight DNA. Gene 200:107–116
Liebminger E, Grass J, Jez J, Neumann L, Altmann F, Strasser R (2012) Myrosinases TGG1 and TGG2 from Arabidopsis thaliana contain exclusively oligomannosidic N-glycans. Phytochemistry 84:24–30
Schoberer J, Runions J, Steinkellner H, Strasser R, Hawes C, Osterrieder A (2010) Sequential depletion and acquisition of proteins during Golgi stack disassembly and reformation. Traffic 11:1429–1444
Jin H, Yan Z, Nam K, Li J (2007) Allele-specific suppression of a defective brassinosteroid receptor reveals a physiological role of UGGT in ER quality control. Mol Cell 26:821–830
Gruber C, Altmann F (2015) Site-specific glycosylation profiling using liquid chromatography-tandem mass spectrometry (LC-MS). Methods Mol Biol 1321:407–415
Elbein AD, Tropea JE, Mitchell M, Kaushal GP (1990) Kifunensine, a potent inhibitor of the glycoprotein processing mannosidase I. J Biol Chem 265:15599–15605
Clerc S, Hirsch C, Oggier D, Deprez P, Jakob C, Sommer T, Aebi M (2009) Htm1 protein generates the N-glycan signal for glycoprotein degradation in the endoplasmic reticulum. J Cell Biol 184:159–172
Ninagawa S, Okada T, Sumitomo Y, Kamiya Y, Kato K, Horimoto S, Ishikawa T, Takeda S, Sakuma T, Yamamoto T, Mori K (2014) EDEM2 initiates mammalian glycoprotein ERAD by catalyzing the first mannose trimming step. J Cell Biol 206:347–356
Su W, Liu Y, Xia Y, Hong Z, Li J (2012) The Arabidopsis homolog of the mammalian OS-9 protein plays a key role in the endoplasmic reticulum-associated degradation of misfolded receptor-like kinases. Mol Plant 5:929–940
Zielinska DF, Gnad F, Schropp K, Wiśniewski JR, Mann M (2012) Mapping N-glycosylation sites across seven evolutionarily distant species reveals a divergent substrate proteome despite a common core machinery. Mol Cell 46:542–548
de Oliveira MVV, Xu G, Li B, de Souza Vespoli L, Meng X, Chen X, Yu X, de Souza SA, Intorne AC, de A. Manhães AME, Musinsky AL, Koiwa H, de Souza Filho GA, Shan L, He P (2016) Specific control of Arabidopsis BAK1/SERK4-regulated cell death by protein glycosylation. Nat Plants 2:15218
Hori H, Elbein AD (1981) Tunicamycin inhibits protein glycosylation in suspension cultured soybean cells. Plant Physiol 67:882–886
Veit C, Vavra U, Strasser R (2015) N-glycosylation and plant cell growth. Methods Mol Biol 1242:183–194
Schoberer J, Liebminger E, Vavra U, Veit C, Castilho A, Dicker M, Maresch D, Altmann F, Hawes C, Botchway SW, Strasser R (2014) The transmembrane domain of N-acetylglucosaminyltransferase I is the key determinant for its Golgi subcompartmentation. Plant J 80:809–822
Hong Z, Jin H, Tzfira T, Li J (2008) Multiple mechanism-mediated retention of a defective brassinosteroid receptor in the endoplasmic reticulum of Arabidopsis. Plant Cell 20:3418–3429
Hüttner S, Veit C, Vavra U, Schoberer J, Dicker M, Maresch D, Altmann F, Strasser R (2014) A context-independent N-glycan signal targets the misfolded extracellular domain of Arabidopsis STRUBBELIG to endoplasmic-reticulum-associated degradation. Biochem J 464:401–411
Acknowledgements
We would like to thank Friedrich Altmann and Daniel Maresch (both Department of Chemistry) for LC-ESI-MS-analysis. This work was supported by grants from the Austrian Science Fund (FWF): P28218 and T655-B20.
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Schoberer, J., Shin, YJ., Vavra, U., Veit, C., Strasser, R. (2018). Analysis of Protein Glycosylation in the ER. In: Hawes, C., Kriechbaumer, V. (eds) The Plant Endoplasmic Reticulum . Methods in Molecular Biology, vol 1691. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7389-7_16
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DOI: https://doi.org/10.1007/978-1-4939-7389-7_16
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