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Kinetic Analysis of Small Silencing RNA Production by Human and Drosophila Dicer Enzymes In Vitro

  • Susan E. Liao
  • Ryuya FukunagaEmail author
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1680)

Abstract

Dicer enzymes produce small silencing RNAs such as microRNAs (miRNAs) and small interfering RNAs (siRNAs), which then are loaded into Argonaute proteins and act as sequence-specific guides. A powerful tool to understand the molecular mechanism of small silencing RNA production by Dicers is an in vitro RNA processing assay using recombinant Dicer proteins. Such biochemical analyses have elucidated the substrate specificities and kinetics of Dicers, the mechanism by which the length of small RNAs produced by Dicers is determined, and the effects of Dicer-partner proteins and endogenous small molecules such as ATP and inorganic phosphate on small RNA production by Dicers, among others. Here, we describe methods for in vitro small RNA production assay using recombinant human and Drosophila Dicer proteins.

Key words

Dicer miRNA siRNA RNA silencing Kinetics 

Notes

Acknowledgments

This work was supported by a grant from American Heart Association (15SDG23220028), a grant from NIH (R01GM116841), and funds provided by Johns Hopkins School of Medicine Department of Biological Chemistry to RF.

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Copyright information

© Springer Science+Business Media LLC 2018

Authors and Affiliations

  1. 1.Department of Biological ChemistryJohns Hopkins University School of MedicineBaltimoreUSA

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