Skip to main content

Selection of Highly Expressed Gene Variants in Escherichia coli Using Translationally Coupled Antibiotic Selection Markers

  • Protocol
Synthetic Metabolic Pathways

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1671))

Abstract

Strategies to select highly expressed variants of a protein coding sequence are usually based on trial-and-error approaches, which are time-consuming and expensive. We address this problem using translationally coupled antibiotic resistance markers. The system requires that the target gene can be fused at the 3′-end with a translational coupling element and an antibiotic resistance gene. Highly expressed target genes can then be selected using a fast and simple whole cell survival assay in the presence of high antibiotic concentrations. Herein we show that the system can be used to select highly expressing clones from libraries sampling translation initiation sites.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 179.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Rosano GL, Ceccarelli EA (2014) Recombinant protein expression in Escherichia coli : advances and challenges. Front Microbiol 5:1–17

    Google Scholar 

  2. Aksoy S, Squires CL, Squires C (1984) Translational coupling of the trpB and trpA genes in the Escherichia coli tryptophan operon. J Bacteriol 157:363–367

    CAS  PubMed  PubMed Central  Google Scholar 

  3. Rex G, Surin B, Besse G et al (1994) The mechanism of translational coupling in Escherichia coli. Higher order structure in the atpHA mRNA acts as a conformational switch regulating the access of de novo initiating ribosomes. J Biol Chem 269:18118–18127

    CAS  PubMed  Google Scholar 

  4. Mendez-Perez D, Gunasekaran S, Orler VJ et al (2012) A translation-coupling DNA cassette for monitoring protein translation in Escherichia coli. Metab Eng 14:298–305

    Article  CAS  PubMed  Google Scholar 

  5. Massey-Gendel E, Zhao A, Boulting G et al (2009) Genetic selection system for improving recombinant membrane protein expression in E. coli. Protein Sci 18:372–383

    Article  CAS  PubMed  Google Scholar 

  6. Gul N, Linares DM, Ho FY et al (2014) Evolved Escherichia coli strains for amplified, functional expression of membrane proteins. J Mol Biol 426:136–149

    Article  CAS  PubMed  Google Scholar 

  7. Tan R, Jiang X, Jackson A et al (2003) E coli selection of human genes encoding secreted and membrane proteins based on cDNA fusions to a leaderless β-lactamase reporter. Genome Res 13:1938–1943

    CAS  PubMed  PubMed Central  Google Scholar 

  8. Mirzadeh K, Martínez V, Toddo S et al (2015) Enhanced protein production in Escherichia coli by optimization of cloning scars at the vector–coding sequence junction. ACS Synth Biol 4:959–965

    Article  CAS  PubMed  Google Scholar 

  9. Mirzadeh K, Toddo S, Nørholm MHH et al (2016) Codon optimizing for increased membrane protein production: a minimalist approach. In: Heterologous expression of membrane proteins, Methods and protocols, methods in molecular biology. Springer Science+Business Media, New York, pp 53–61

    Chapter  Google Scholar 

  10. Inoue H, Nojima H, Okayama H (1990) High efficiency transformation of Escherichia coli with plasmids. Gene 96:23–28

    Article  CAS  PubMed  Google Scholar 

  11. Cavaleiro AM, Kim SH, Seppälä S et al (2015) Accurate DNA assembly and genome engineering with optimized uracil excision cloning. ACS Synth Biol 4:1042–1046

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Morten H. H. Nørholm .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Rennig, M., Daley, D.O., Nørholm, M.H.H. (2018). Selection of Highly Expressed Gene Variants in Escherichia coli Using Translationally Coupled Antibiotic Selection Markers. In: Jensen, M.K., Keasling, J.D. (eds) Synthetic Metabolic Pathways. Methods in Molecular Biology, vol 1671. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7295-1_16

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-7295-1_16

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7294-4

  • Online ISBN: 978-1-4939-7295-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics